G277506


Basic Information

Item Value
gene id G277506
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 5661811 ~ 5663019 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU328966
tgtaagtaaagtaagtagagtaaTAAAAGTAATTTAAGTAAAGTGAGGTaggtaaaattaattaaagtaagttaagtaagtaagtaatgtAAGTAAGAAAACCAggtaaattaaataatgtaagtAGTCAGTTCATCCATACACCTATCTATTTAATGTCACACGCATCTCAAATAGTTAAACAATAATGCTGTTTTTATGTGAGATAGAAGGCGACAATACTGCAGCTCATAACCAAAATGTTGGCCAACATGATTTACTACATGGACATAAACTCATCATTTCCcttaatctgtattaatgcacttcacTAATGAACTAGCTCACCGTATGCTGTTACATTACTATACATTTCCTGACACCAAAACATGGCACTGAGCAGCATACAGTATTTATGCACTTTTATTGGCCTGGTGGGTTCGCTAAtagatttatgatttgtccacccctgagtCCAGTGCAGGAAGAGTACTAATAGATCGTGGTGTATTTATCTGTATGCCTCGTCATCTCTGGGAAGTGATACAGAGTCCCCGTAAAACAGTGCAGATTCAGTGGATGAGACTCCAGAGGCCACCGAAGTGTGATGACTGAAATCGAGAACACCTCCACCTCAAATTGGGACAAAGTGTCCTGCTGATGAAGTCACCTGCTTGAGTCTGTAGCGAAAGCATCTGCTCCTGCTTTTAAACACAGGCTTAACGTCCTGTGAGCTGCACACACTGCTCTGAACGTACTGTCTCTGTGCTCGCCGTTGGCGTCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU328966 True 764 lncRNA 0.40 2 5661811 5663019

Neighbor

gene id symbol gene type direction distance location
LOC113532275 LOC108279443 coding downstream 36112 5565677 ~ 5625699 (-)
pah pah coding downstream 110858 5529156 ~ 5550953 (-)
th2 LOC108279869,LOC108437952,LOC107695848 coding downstream 132991 5514082 ~ 5528820 (-)
parpbp parpbp coding downstream 174804 5464313 ~ 5487007 (-)
casc1 casc1 coding downstream 242754 5405474 ~ 5419057 (-)
si:dkeyp-38g8.5 LOC108280028 coding upstream 121891 5784910 ~ 5790989 (-)
ucn3l ucn3 coding upstream 347271 6010290 ~ 6011543 (-)
col7a1l LOC108279990,LOC108435442,LOC107676908 coding upstream 350005 6013024 ~ 6112709 (-)
LOC113532437 NA coding upstream 370010 6033029 ~ 6033193 (-)
trnam-cau_46 NA coding upstream 440057 6103076 ~ 6103147 (-)
G277447 NA non-coding downstream 101489 5559934 ~ 5560322 (-)
G277443 NA non-coding downstream 213124 5447151 ~ 5448687 (-)
G277066 NA non-coding downstream 302583 5358451 ~ 5359228 (-)
G277065 NA non-coding downstream 303607 5355900 ~ 5358204 (-)
LOC117599571 NA non-coding downstream 335097 5315907 ~ 5326714 (-)
G277508 NA non-coding upstream 6549 5669568 ~ 5670534 (-)
G277519 NA non-coding upstream 67826 5730845 ~ 5731069 (-)
G277502 NA non-coding upstream 98641 5761660 ~ 5766267 (-)
G277500 NA non-coding upstream 114983 5778002 ~ 5781171 (-)
G277567 NA non-coding upstream 297655 5960674 ~ 5997392 (-)
tmpoa LOC108279628 other downstream 677496 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 922812 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 1074715 4358625 ~ 4587096 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 318119 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 319273 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 1758969 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 2303800 7966819 ~ 7970571 (-)
G278634 NA other upstream 2390069 8053088 ~ 8068077 (-)

Expression


Co-expression Network