G277575 (copg2,LOC108279806,LOC102787195)


Basic Information

Item Value
gene id G277575
gene name copg2,LOC108279806,LOC102787195
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 5982292 ~ 5984564 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU329042
TTCGCACCAGTGGCTACAAGTAAAGCTCCTGAAAACTGGCACCTTCACGCCAAGACATTTACCAAGagcAACTCTCCACCATTCCCGAGTTCCAGGGTCTTGGTCCTCTGTTCAAGTCGTCAGAGCCGGTGCAGCTGACGGAGGCTGAGACAGAATACGTGGTTCGCTGCATCAAGCACACGTTTGCTGGTCACATGGTGTTCCAGTTCGACTGCACCAACACACTGAACGACCAGCTCCTTCAGCGCGTCCTGGTGCAGATGGAGCCGTCCGAGTCTTACGAAGTGGTGCATCACATCCCGGCTCCCAGCCTGCCTTACAACCAGCCTGGCTCCTGCTACACACTCGTCCGCCTGCCAGACGACGACCCCACAGCAGTGTCCTGCACGTTCAGCTGTAACGATGAAATATCTGGTGCGTGATTGTGATCCAAACACCGG

Function

symbol description
copg2 Predicted to enable structural molecule activity. Predicted to be involved in Golgi vesicle transport; organelle transport along microtubule; and protein secretion. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus; cytoplasmic vesicle; and membrane. Predicted to be part of COPI vesicle coat. Predicted to be active in Golgi membrane; endoplasmic reticulum; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in several structures, including axis; notochord; periderm; polster; and solid lens vesicle. Orthologous to several human genes including COPG2 (COPI coat complex subunit gamma 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU329042 True 440 TUCP 0.56 3 5982292 5984564

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-38g8.5 LOC108280028 coding downstream 191303 5784910 ~ 5790989 (-)
LOC113532275 LOC108279443 coding downstream 356593 5565677 ~ 5625699 (-)
pah pah coding downstream 431339 5529156 ~ 5550953 (-)
th2 LOC108279869,LOC108437952,LOC107695848 coding downstream 453472 5514082 ~ 5528820 (-)
parpbp parpbp coding downstream 495285 5464313 ~ 5487007 (-)
ucn3l ucn3 coding upstream 25726 6010290 ~ 6011543 (-)
col7a1l LOC108279990,LOC108435442,LOC107676908 coding upstream 28460 6013024 ~ 6112709 (-)
LOC113532437 NA coding upstream 48465 6033029 ~ 6033193 (-)
trnam-cau_46 NA coding upstream 118512 6103076 ~ 6103147 (-)
lrguk lrguk coding upstream 148995 6133559 ~ 6163886 (-)
G277500 NA non-coding downstream 201121 5778002 ~ 5781171 (-)
G277502 NA non-coding downstream 216025 5761660 ~ 5766267 (-)
G277519 NA non-coding downstream 251223 5730845 ~ 5731069 (-)
G277508 NA non-coding downstream 311758 5669568 ~ 5670534 (-)
G277506 NA non-coding downstream 319273 5661811 ~ 5663019 (-)
G277878 NA non-coding upstream 799095 6783659 ~ 6787471 (-)
G277881 NA non-coding upstream 806698 6791262 ~ 6791475 (-)
G278225 NA non-coding upstream 893188 6877752 ~ 6878941 (-)
G278265 NA non-coding upstream 1087182 7071746 ~ 7074585 (-)
G278275 NA non-coding upstream 1244441 7229005 ~ 7229440 (-)
tmpoa LOC108279628 other downstream 997977 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 1243293 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 1395196 4358625 ~ 4587096 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 1437424 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 1982255 7966819 ~ 7970571 (-)
G278634 NA other upstream 2068524 8053088 ~ 8068077 (-)
G278912 NA other upstream 2233997 8218561 ~ 8219680 (-)
G279415 NA other upstream 3222787 9207351 ~ 9208563 (-)

Expression


Co-expression Network