G278275


Basic Information

Item Value
gene id G278275
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 7229005 ~ 7229440 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU329874
GTCGCTCAGTACCAGGGGCCGTGTCCTCCATGACTGGGCTGTCTGTTATAGTGTTGGGTGGCTGCCAGTAGCACATAGTGCCCAGGGAGAAAACAACTCTCATGACAGTAagtcaatctctctctcacacacacacacacacacacacacctggtagTTTCTGGTGCTTGTGGCTTGCTGCtattttcctgtgtttgtgaTGATATGTAAAAGAGGACTCGGATGTACATggtttctctctgtgtgcttGTTCATGACGTTTTGAGAGGCTGATGCCTCCTGCATCCCACCAGACAATAATCAGGATAATGTCACAGCAGAGTTGTGCTTCTCCTTATGATCCCAAAAGGCGTCCTGATCATAACTGATAACTTACAGGATATTCTGGGAatattaaaagtgtaaaattaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU329874 True 412 lncRNA 0.46 2 7229005 7229440

Neighbor

gene id symbol gene type direction distance location
wnt5b wnt5b,LOC108279752,LOC107656325,LOC107726030,LOC107572035,LOC107658849 coding downstream 193977 6926768 ~ 7035028 (-)
adipor2 adipor2 coding downstream 309316 6879529 ~ 6919689 (-)
nudt5 nudt5,LOC107658859,LOC107656337,LOC107726016,LOC107743836 coding downstream 359392 6863931 ~ 6869613 (-)
tspan33a tspan33,tspan33a,LOC107725621,LOC107676927 coding downstream 366978 6845898 ~ 6862027 (-)
smo smo,LOC107725609,LOC107729864,LOC107690544 coding downstream 386981 6828753 ~ 6842024 (-)
ninj2 ninj2,LOC108279754,LOC108428107,LOC103036097,LOC107581271,LOC107743858,LOC107656339,LOC107725989 coding upstream 19426 7248866 ~ 7290391 (-)
optn optn coding upstream 161775 7391215 ~ 7403507 (-)
LOC113531701 NA coding upstream 280648 7510088 ~ 7527943 (-)
ttll12 ttll12,LOC107581273 coding upstream 310484 7539924 ~ 7560116 (-)
pnpla3 LOC108279447,LOC108428138 coding upstream 330709 7560149 ~ 7592040 (-)
G278265 NA non-coding downstream 154420 7071746 ~ 7074585 (-)
G278225 NA non-coding downstream 350064 6877752 ~ 6878941 (-)
G277881 NA non-coding downstream 437530 6791262 ~ 6791475 (-)
G277878 NA non-coding downstream 441534 6783659 ~ 6787471 (-)
G277567 NA non-coding downstream 1231613 5960674 ~ 5997392 (-)
LOC117599447 NA non-coding upstream 184908 7414348 ~ 7416071 (-)
G278312 NA non-coding upstream 266132 7495572 ~ 7496263 (-)
LOC117599592 NA non-coding upstream 301344 7530784 ~ 7534282 (-)
G278520 NA non-coding upstream 567395 7796835 ~ 7879017 (-)
G278911 NA non-coding upstream 987573 8217013 ~ 8217293 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other downstream 1223876 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other downstream 1244441 5982292 ~ 5984564 (-)
tmpoa LOC108279628 other downstream 2244690 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 2490006 4734931 ~ 4738999 (-)
LOC117599578 LOC108279645 other downstream 2746440 4466061 ~ 4482565 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 192548 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 737379 7966819 ~ 7970571 (-)
G278634 NA other upstream 823648 8053088 ~ 8068077 (-)
G278912 NA other upstream 989121 8218561 ~ 8219680 (-)
G279415 NA other upstream 1977911 9207351 ~ 9208563 (-)

Expression


Co-expression Network