avpr1ab (LOC108279517)


Basic Information

Item Value
gene id avpr1ab
gene name LOC108279517
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 7966819 ~ 7970571 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU330235
GGGTACAGTTGTTCataataaagtggttggtgagtgtattttACACATAGAACTGCAGAAATATTtgctgaataaataatgtaactACCTGAAATTACAGTAATGCCTATCAGAGATATTGTAATGCCTAGataaactgctttaaaaaatgacatgatgAATGTATGTTCTTGTCTATCCATATTTGTCTGTCtttgaattatattttttgtggctccacatttaaatattgacataacagtagctgaaaatacaaaatgtttcacATTGTCTTTTGGGTTTTTGGAAATTCATGTAATTCATGTATGCAAAGCATCTGGATGTTATGTAACTGCTGCTTATGCCTGACCAGTGCATTTTGCCTAATGTGGCCGAAAGAGAAATAAGAACTTTACCGTTATTGCTCACTTGTTCTTCTATTTTGTCCAGATGTCCTGTCATGTAAAAGTTTGCACAGGTTGTTTTTAAGGTTGCCTATAATTTAGGTAACTGTGACAAAGTGTATTGTAACCccatataaatcctataaaTACTTCTAAATATGGTAAATGTTTTGCCTTGACTTTCTGTGTTAGGTATATGCAGGCCCATTTCATGCTATAA
>XM_026922687.2
GATTCAGAAACTGCGCTGTGAGTCCGGTGGCACTGAGCAAATGGCAGTGAATGTGATCTGTGTGCGCGCGCCTGTGCCTTGACTGTGCCTTTTGCGCGCAGGAGACGTTAGCAGAATCCCTTCTATTCACTATTAACCATTACGCATGACTGACCGGATGGCGCACGCCGGACCAGGGCTCTGTGCTCCCCTGCCGGAAACCGGTCCACACGGGAACGGCACGCACAGTAACCGGACCCTGTGCCTGAACGCCTCGGATATGCACGCAGCTGGAAACAGGAGCCTGGCGGGGAACAGCAGCGGCGATCCCTTCGGCCGTAATGAGGAAGTGGCCAAGCTGGAGATCACGGTGCTGAGCTTGACCTTCCTGGCGGCGGTGGCGGGTAACGTGAGCGTGCTGCTGGCCGTGCGCAACGCAGCCAAGAAGAGCTCGCGTGTGCACCTGTTCATCAAGCACCTGAGCCTCGCCGACCTGGTGGTGGCCTTCTTCCAGGTCCTGCCGCAGCTCTGCTGGGAGATCACGTTCCGCTTCTACGGACCCGACTTCCTGTGCCGCGTGGTGAAGCACCTCCAGGTGCTCGGCATGTTCGCCTCCACCTACATGCTGGTGATGCTCACGGTGGACCGTTACATCGCCATCTGCCACCCGTTACGGAGCTTGCAGGGTGCCACGCGCCGCGCGCGCCTCATGATCGCGTGCACGTGGCTGTGCAGTGTTGTGCTCAGCACCCCGCAGTATTTCATCTTCTCCCTCAGCGAGATTGAAAGAGGCTCGGACGTGTACGACTGCTGGGGTCATTTCATCGAGCCGTGGGGCGTGCGCGCCTACATCACCTGGATCACCGTGGGCATCTTTCTCATCCCGGTGTCCGTGCTGGTCGTGTGTTACGGATTTATCTGCCGCAGCATCTGGAAGAACGTCAAGTGCAAGACGAAGAGCGGCGCGGCGCACGGCACGAGCGCGCTGATCGGCAAGGCGTCGGTGAGCAGCGTGAGCACCATCTCCCGGGCCAAACTCCGCACCGTCAAAATGACCTTCGTCATCGTGCTCGCCTACATCGTGTGCTGGGCTCCGTTCTTCATCGTGCAGATGTGGTCCGTGTGGGACGAGAATTTCTCCTGGGACGATTCGGAGAATACGGCGGTGACCCTGTCGGCTCTGCTCGCCAGCCTGAACAGCTGCTGCAACCCGTGGATCTACATGCTGTTCGGTGGTCACCTCCTGTACGACTTCCTGCGCTGCTTCCCATGCTGTCGGAAGCTCGGGCACGGCATCCGTAACGACTCAGACAGTAGCCTGAGGAGGAATACGCTGCTGAGCAAACTACCTGCTGCCTGCACACCCACAAACGCCTCGGACTCATGGAGGGACTCGCACAAGACCAGCCAGTCTGTAGCACAAGACTGTTCCCATAAAGTCAACCCGTGCGTCCCTGCGGACTCTTCACACAAGAGTAGTCCCAGCATAGACAATCTGAACAAACACAGTCACACCAACCCGGCTCAAGTCCTAGATacagacagctgaagactgtTTTTAGTGCACTTTTGTCAACTATGGTTCCATTCATTTGAATGTTTACATTTGCTtgctgctcattcatgcaattatccaatgaGCCAGTCAtatagcagcagtgcaatgcatgcAGAtccaagtcaagagcttcagttaatgttcacatcaaacatcagaatagggaagaCATGTCATCTCAGTGACTGTGACTGTGGCACAGGTTCACCTAAACCGGACAGTTGAagacattgcctggtctttattcagttttggaactcaatgtggtcttctgctgttgtagtccatctgtCTATAGATGCAGCATGTTCTGCATTTTTGAGATGCTTTCttctcaccacagttgtaaagagtggttatttgtgttaccATAGCTTTTCTGCCAGCTTAAACCAGTctagtcattctcctctgacctttctcaacAAGTCatttctggatgttttttgttcttcacaCCACTGagactgctgtgcatgaaaaaacccagaagatcagcagtttctgaaatactcaatgcCTCCTGACACCAACAATCATGTCACCGTcaaaatcacagtttttctccattctgatgtttaatgtgaacattaactgaagctcttgacttgggtctgtgtgattttatgtattacactgctaccacatgattggctgaaaggataattgcatgaatgggcAGGGGTACAGTTGTTCataataaagtggttggtgagtgtattttACACATAGAACTGCAGAAATATTtgctgaataaataatgtaactACCTGAAATTACAGTAATGCCTATCAGAGATATTGTAATGCCTAGataaactgctttaaaaaatgacatgatgAATGTATGTTCTTGTCTATCCATATTTGTCTGTCtttgaattatattttttgtggctccacatttaaatattgacataacagtagctgaaaatacaaaatgtttcacATTGTCTTTTGGGTTTTTGGAAATTCATGTAATTCATGTATGCAAAGCATCTGGATGTTATGTAACTGCTGCTTATGCCTGACCAGTGCATTTTGCCTAATGTGGCCGAAAGAGAAATAAGAACTTTACCGTTATTGCTCACTTGTTCTTCTATTTTGTCCAGATGTCCTGTCATGTAAAAGTTTGCACAGGTTGTTTTTAAGGTTGCCTATAATTTAGGTAACTGTGACAAAGTGTATTGTAACCccatataaatcctataaaTACTTCTAAATATGGTAAA

Function

NR:

description
PREDICTED: arg8-vasotocin receptor

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005000 vasopressin receptor activity molecular_function

KEGG:

id description
K04226 AVPR1A; arginine vasopressin receptor 1A

RNA

RNA id representative length rna type GC content exon number start site end site
TU330235 False 603 lncRNA 0.33 1 7966819 7967421
XM_026922687.2 True 2768 mRNA 0.50 2 7966873 7970571

Neighbor

gene id symbol gene type direction distance location
hcfc2 hcfc2 coding downstream 10210 7946410 ~ 7956609 (-)
LOC113531950 NA coding downstream 30028 7932973 ~ 7936791 (-)
chst11 chst11,LOC107580584,LOC107656313,LOC107743617,LOC107592229 coding downstream 42121 7871744 ~ 7924698 (-)
c18h12orf45 c19h12orf45 coding downstream 136681 7826289 ~ 7830138 (-)
scube1 scube1,LOC107592233,LOC107726032 coding downstream 180340 7701032 ~ 7786479 (-)
c18h12orf66 c19h12orf66,cunh12orf66,LOC107592225,LOC107658829,LOC107726025,LOC107743608 coding upstream 132903 8103474 ~ 8114786 (-)
si:ch73-139j3.4 NA coding upstream 250981 8221552 ~ 8226121 (-)
tymp tymp,LOC104957567 coding upstream 269184 8239755 ~ 8247746 (-)
shank3b LOC108279923,LOC108428159 coding upstream 279541 8250112 ~ 8281879 (-)
cdnf cdnf,LOC107744152,LOC107726000,LOC107592258,LOC107656217,LOC107581044 coding upstream 313225 8283796 ~ 8290673 (-)
G278520 NA non-coding downstream 87802 7796835 ~ 7879017 (-)
LOC117599592 NA non-coding downstream 432537 7530784 ~ 7534282 (-)
G278312 NA non-coding downstream 470556 7495572 ~ 7496263 (-)
LOC117599447 NA non-coding downstream 550748 7414348 ~ 7416071 (-)
G278275 NA non-coding downstream 737379 7229005 ~ 7229440 (-)
G278911 NA non-coding upstream 246442 8217013 ~ 8217293 (-)
G278920 NA non-coding upstream 268403 8238974 ~ 8239676 (-)
G278963 NA non-coding upstream 418927 8389498 ~ 8390559 (-)
G279064 NA non-coding upstream 641547 8612118 ~ 8612342 (-)
LOC117599455 NA non-coding upstream 727859 8698430 ~ 8698791 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other downstream 466740 7421988 ~ 7500079 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other downstream 1961690 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other downstream 1982255 5982292 ~ 5984564 (-)
tmpoa LOC108279628 other downstream 2982504 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 3227820 4734931 ~ 4738999 (-)
G278634 NA other upstream 82517 8053088 ~ 8068077 (-)
G278912 NA other upstream 247990 8218561 ~ 8219680 (-)
G279415 NA other upstream 1236780 9207351 ~ 9208563 (-)
cracr2ab LOC108280118 other upstream 1907910 9878481 ~ 9892386 (-)
LOC113532274 NA other upstream 2285401 10255972 ~ 10296198 (-)

Expression


Co-expression Network