G278634


Basic Information

Item Value
gene id G278634
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 8053088 ~ 8068077 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU330291
AGGAGGAGAAAgaggaggaagaggaggaaggacACCAGGCGAGGAGCATCTGCAGACAGGTAACAGTCAGGTGTGCAGCTTTATTAACTGATCTTACCTTTCACTTGGCTCTCATACTCCGTGAGGATCTCCTTCTCCTTTTTAAACTTCACCGTGCCCGACATGGTCTTCCACCCCTGGGTTCTGTCTCTGCGGTGCGGATTTACTACTGATCCAaaccttcctcctcctcctcctcctcctagtcctccttcttcttcttcactggCACTGATGCGTCATATCCAGCCACGGGTTCACCACGATCGGAAAAAACCCCACTCCAAAATCACAATTCAAGCTGTCCTCGCTTTAAATGTCCTACACTCTGCGGCACGCGCTACAGAAGTCCACCGTGTCGGCTGTCACAccgggaggaaaaaaaaaacaaaccactgGCATTTAAACCCAGAAGGGCGTCGTTACATGGCGAGTTTAAAGCAAACCTGCGCAGAAGGAGCCTGGAAGCCTGGATTTCTCTTcgtctgtcttgtttttgctcaCGCGGTACTCGAGAGGAGGGAAACCGGGCGGCACGCGCTCCACTAATCAaatgcgtgtgtgcgtgtgcgcgcgcgagaAAAATGATTCACGCCTCCCAGTTCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU330291 True 646 TUCP 0.52 3 8053088 8068077

Neighbor

gene id symbol gene type direction distance location
hcfc2 hcfc2 coding downstream 96479 7946410 ~ 7956609 (-)
LOC113531950 NA coding downstream 116297 7932973 ~ 7936791 (-)
chst11 chst11,LOC107580584,LOC107656313,LOC107743617,LOC107592229 coding downstream 128390 7871744 ~ 7924698 (-)
c18h12orf45 c19h12orf45 coding downstream 222950 7826289 ~ 7830138 (-)
scube1 scube1,LOC107592233,LOC107726032 coding downstream 266609 7701032 ~ 7786479 (-)
c18h12orf66 c19h12orf66,cunh12orf66,LOC107592225,LOC107658829,LOC107726025,LOC107743608 coding upstream 35397 8103474 ~ 8114786 (-)
si:ch73-139j3.4 NA coding upstream 153475 8221552 ~ 8226121 (-)
tymp tymp,LOC104957567 coding upstream 171678 8239755 ~ 8247746 (-)
shank3b LOC108279923,LOC108428159 coding upstream 182035 8250112 ~ 8281879 (-)
cdnf cdnf,LOC107744152,LOC107726000,LOC107592258,LOC107656217,LOC107581044 coding upstream 215719 8283796 ~ 8290673 (-)
G278520 NA non-coding downstream 174071 7796835 ~ 7879017 (-)
LOC117599592 NA non-coding downstream 518806 7530784 ~ 7534282 (-)
G278312 NA non-coding downstream 556825 7495572 ~ 7496263 (-)
LOC117599447 NA non-coding downstream 637017 7414348 ~ 7416071 (-)
G278275 NA non-coding downstream 823648 7229005 ~ 7229440 (-)
G278911 NA non-coding upstream 148936 8217013 ~ 8217293 (-)
G278920 NA non-coding upstream 170897 8238974 ~ 8239676 (-)
G278963 NA non-coding upstream 321421 8389498 ~ 8390559 (-)
G279064 NA non-coding upstream 544041 8612118 ~ 8612342 (-)
LOC117599455 NA non-coding upstream 630353 8698430 ~ 8698791 (-)
avpr1ab LOC108279517 other downstream 82517 7966819 ~ 7970571 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other downstream 553009 7421988 ~ 7500079 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other downstream 2047959 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other downstream 2068524 5982292 ~ 5984564 (-)
tmpoa LOC108279628 other downstream 3068773 4966232 ~ 4984315 (-)
G278912 NA other upstream 150484 8218561 ~ 8219680 (-)
G279415 NA other upstream 1139274 9207351 ~ 9208563 (-)
cracr2ab LOC108280118 other upstream 1810404 9878481 ~ 9892386 (-)
LOC113532274 NA other upstream 2187895 10255972 ~ 10296198 (-)
si:ch211-51e12.7 LOC108280090 other upstream 2927028 10995105 ~ 11007143 (-)

Expression


Co-expression Network