G278920


Basic Information

Item Value
gene id G278920
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 8238974 ~ 8239676 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU330657
tatgaatGCCAGATgtaaattacaattttatgattaattatttagttTAATTGCTAGTTTAAAATTGCTATATGTTGCTTTTCAAAGAGTAACAGGGCTGAAAGTAACAGGGTTGGTCATTCAATATCACAATACAGTTGGTgcaaattgttattattttgtttaaagatcttattttttttcatttagtagcattcagaagctacataagcaatttacatgtttcccagaagacaaaataataacaatttacaccaatcatcctgttaaaaaaaacccgGCTCTTAATGGAGTGTGTTGCTTTCTTGAGtgtcagtgaatgtttgcaccttttgtaatagttgtgtacgagtccctcagttgtgcaggacctggagaaTTTTTCgaaagaacagtgggcagtttaactgctcaggacaaaaaGGGACTcgtgaacaactatcacaaaacaaaaacagtcgttaatcatccaggtaacaacacagagtattaagaatcaagtgtatgtaaacttttgaactggtttatttgtgtaaattcagttatatttgtgccttgtggactatatgtaaacatgttatgtgaaatagcttattcagggcgatactaaataaaaacaaaatgcaatttttatgatccctcttattttttttaaattattaacattttgcagattctgcaaggcgcatgtaaacttatgacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU330657 True 703 lncRNA 0.32 1 8238974 8239676

Neighbor

gene id symbol gene type direction distance location
si:ch73-139j3.4 NA coding downstream 12853 8221552 ~ 8226121 (-)
c18h12orf66 c19h12orf66,cunh12orf66,LOC107592225,LOC107658829,LOC107726025,LOC107743608 coding downstream 124188 8103474 ~ 8114786 (-)
hcfc2 hcfc2 coding downstream 282365 7946410 ~ 7956609 (-)
LOC113531950 NA coding downstream 302183 7932973 ~ 7936791 (-)
chst11 chst11,LOC107580584,LOC107656313,LOC107743617,LOC107592229 coding downstream 314276 7871744 ~ 7924698 (-)
tymp tymp,LOC104957567 coding upstream 79 8239755 ~ 8247746 (-)
shank3b LOC108279923,LOC108428159 coding upstream 10436 8250112 ~ 8281879 (-)
cdnf cdnf,LOC107744152,LOC107726000,LOC107592258,LOC107656217,LOC107581044 coding upstream 44120 8283796 ~ 8290673 (-)
dclre1c dclre1c,LOC108279967,LOC106595997 coding upstream 61803 8301479 ~ 8311669 (-)
dmtf1 dmtf1,LOC106594134 coding upstream 83319 8322995 ~ 8334489 (-)
G278911 NA non-coding downstream 21681 8217013 ~ 8217293 (-)
G278520 NA non-coding downstream 359957 7796835 ~ 7879017 (-)
LOC117599592 NA non-coding downstream 704692 7530784 ~ 7534282 (-)
G278312 NA non-coding downstream 742711 7495572 ~ 7496263 (-)
LOC117599447 NA non-coding downstream 822903 7414348 ~ 7416071 (-)
G278963 NA non-coding upstream 149822 8389498 ~ 8390559 (-)
G279064 NA non-coding upstream 372442 8612118 ~ 8612342 (-)
LOC117599455 NA non-coding upstream 458754 8698430 ~ 8698791 (-)
LOC113532431 NA non-coding upstream 569544 8809220 ~ 8809338 (-)
G279382 NA non-coding upstream 953940 9193616 ~ 9194003 (-)
G278912 NA other downstream 19294 8218561 ~ 8219680 (-)
G278634 NA other downstream 170897 8053088 ~ 8068077 (-)
avpr1ab LOC108279517 other downstream 268403 7966819 ~ 7970571 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other downstream 738895 7421988 ~ 7500079 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other downstream 2233845 5981138 ~ 6005129 (-)
G279415 NA other upstream 967675 9207351 ~ 9208563 (-)
cracr2ab LOC108280118 other upstream 1638805 9878481 ~ 9892386 (-)
LOC113532274 NA other upstream 2016296 10255972 ~ 10296198 (-)
si:ch211-51e12.7 LOC108280090 other upstream 2755429 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 2839492 11079168 ~ 11094176 (-)

Expression


Co-expression Network