G279588


Basic Information

Item Value
gene id G279588
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9336336 ~ 9337530 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU331392
tttttttattcacataaaACTCTGCGTTACAGTTAGGagtgttttgtgtaaaaaaagatCACTGTTTGTGAATCATAACTGACACATatgttttcattatttgttcCTAGGTAGTAACACAGAAAAAACTAGACTAAAAGACCATCGCAAccgtattcacacacacacacacacacacacacacataccggATCATCAGACaattttcagttcattaaaTCACTATTATTCACCATGCTGCTGCCATTCCACAGTCTCCAAATGTACAGCAGATTCTGAGTGTCCAACGCTCACTGGCAGAACAGATCCTGAGCTTTAAAGAGCATCTGCAGTCTTTTCAGCTATCCTGGAGCAGGTCATACGAGCCTCCATCAACTACCTGGTGCTTGTCATCCTTCTACAAGTGTTAGTACAATCAAGTATTAGTACTGCCTATAAGACCCTACAATAAGCTGCTGTTGTGTTATATGTAAACATAGTTATAGAGCCATAAATAGGTCATATAgtgtcatattttcttttacttacGTCTTCCACAGGGAGGTCTGGGGCACTAGGGGCAGCTGTAGTCTCATACATGGGGTTACTGATATATGGTGTAGACTCAGGTGAGCTTGAATCTTCCTTCTCATCCTCCTGAAAGGAAATGCATATAGAAGTGAACATAGAGGCCAAAACCAGGAAAACACCCATGAATTGAATTCTGTTGAAATTCTATTTCactatgaaaaaatgaaatgtagtgGTTTAGACAACAATCTAAAATATAGGAGAAGATCAACAGAAAAACAGCTTAAAATCAAAATTTTGCCATGATCCCATAGCCTCAAGACCTCAAGGGGGCATTTGCGTTTGGCATCACCTATGAAGGCAAAAGGTAAAAGGGCATACAAGTAAAAGAATATTTagatgtaaaaatgaatgtaaattagTCTCAAATCAGTATAATTTAGTCTCTTTCAGAATTaatattttcacactgtttAAACATTTCTGATACTTGAAAATGAAAGATCATCTATGAAACcaaacacactaaatgtcttatttgtataaattaagtaaacattaaaacacaacagggtatgctgttatagaggagttactgttactaccacgaagtggattattttcctataaaagaaTGTCACAAAGTGTATAACACAG

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU331392 True 1167 lncRNA 0.36 2 9336336 9337530

Neighbor

gene id symbol gene type direction distance location
parietopsin LOC108279599 coding downstream 44927 9289095 ~ 9291409 (-)
tspan12 tspan12,LOC107592202,LOC107656244,LOC107565667,LOC107658802 coding downstream 147401 9167589 ~ 9188935 (-)
hsp90b1 hsp90b1,LOC107656288,LOC107726017 coding downstream 702381 8626921 ~ 8633955 (-)
sbf1 sbf1 coding downstream 787708 8488152 ~ 8548628 (-)
parp12b LOC108279682,LOC108428170 coding downstream 853765 8473937 ~ 8482571 (-)
LOC113532331 LOC108279597,LOC108279598,LOC105020203,LOC105912087 coding upstream 1238 9338768 ~ 9347046 (-)
LOC113531956 LOC108279597,LOC108279598 coding upstream 13348 9350878 ~ 9359050 (-)
mkln1 mkln1,LOC107754054,LOC107655615,LOC107560731,LOC107757245,LOC107587826 coding upstream 54499 9392029 ~ 9423268 (-)
asb13a.2 asb13a.2,LOC108280001,LOC108436004,LOC103022068,LOC107754063,LOC107560715,LOC107655562 coding upstream 222381 9559911 ~ 9593266 (-)
asb13a.1 LOC108279822,LOC108436003 coding upstream 256928 9594458 ~ 9600035 (-)
G279382 NA non-coding downstream 142333 9193616 ~ 9194003 (-)
LOC113532431 NA non-coding downstream 526998 8809220 ~ 8809338 (-)
LOC117599455 NA non-coding downstream 637545 8698430 ~ 8698791 (-)
G279064 NA non-coding downstream 723994 8612118 ~ 8612342 (-)
G278963 NA non-coding downstream 945777 8389498 ~ 8390559 (-)
G279592 NA non-coding upstream 48603 9386133 ~ 9389747 (-)
G279620 NA non-coding upstream 146563 9484093 ~ 9484948 (-)
G279621 NA non-coding upstream 147537 9485067 ~ 9485769 (-)
G279624 net1 non-coding upstream 180456 9517986 ~ 9519727 (-)
G279625 NA non-coding upstream 182303 9519833 ~ 9520078 (-)
G279415 NA other downstream 127773 9207351 ~ 9208563 (-)
G278912 NA other downstream 1116656 8218561 ~ 8219680 (-)
G278634 NA other downstream 1268259 8053088 ~ 8068077 (-)
avpr1ab LOC108279517 other downstream 1365765 7966819 ~ 7970571 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other downstream 1836257 7421988 ~ 7500079 (-)
cracr2ab LOC108280118 other upstream 540951 9878481 ~ 9892386 (-)
LOC113532274 NA other upstream 918442 10255972 ~ 10296198 (-)
si:ch211-51e12.7 LOC108280090 other upstream 1657575 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 1741638 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 1901405 11238935 ~ 11259412 (-)

Expression


Co-expression Network