G279621


Basic Information

Item Value
gene id G279621
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9485067 ~ 9485769 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU331437
CTGACCTTACGTTCACATTAGCATGCATCAGATCTTTCGtgttgcttgtagtttgtctcctGTGGGTGTAAAGCAGCTGTTGCTGTTGTCACCTGTGGGCATGCACTGTCCAGTGTTCCGATGAGAAACACTAACATTCAAAACATAAATACCTCTAAAGTTAAAGAGTTCAACacaatttaataatgtactaatcagtgtgaaattggTTGTTTGTTACTTGTTTACATGTTGCATGCTAGGTTTCTTACTAGCTATATACACTTcattccaagctttatttttcttcctaatgtcTCTATATGCATTTAATTAGAGGTCATGTATGACAGGacaagatgaaaccatggttataagttttcttccatttttgtgtgtcaaacagtaaatgggaactaattgcaggaaCTAAAGCCGccagtggggaactgaagaaactttGGCCCGCAAGTGCCACAGGAAGGGTCCGAGGAATCAGTCAAACGAAACGTTTGGGTTTGTCATTTTACCACATCACAGCTAATTTGCTGTCGCTGAAATCGCGGCTCCGTGTCACGCATGTACATAGAAACTTAACGGCTACATGTCGCTTTGTTGCACACTAGTGTGAATGTAAGGTTACTGTTCTAAAGAGTCTAGCGCTCATGTGATTAGTAGTATAAAAAAATCTCTGTGCAGGTTCCCTCGTGTAGCCCATGTGGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU331437 True 703 lncRNA 0.41 1 9485067 9485769

Neighbor

gene id symbol gene type direction distance location
mkln1 mkln1,LOC107754054,LOC107655615,LOC107560731,LOC107757245,LOC107587826 coding downstream 61799 9392029 ~ 9423268 (-)
LOC113531956 LOC108279597,LOC108279598 coding downstream 126017 9350878 ~ 9359050 (-)
LOC113532331 LOC108279597,LOC108279598,LOC105020203,LOC105912087 coding downstream 138021 9338768 ~ 9347046 (-)
parietopsin LOC108279599 coding downstream 193658 9289095 ~ 9291409 (-)
tspan12 tspan12,LOC107592202,LOC107656244,LOC107565667,LOC107658802 coding downstream 296132 9167589 ~ 9188935 (-)
asb13a.2 asb13a.2,LOC108280001,LOC108436004,LOC103022068,LOC107754063,LOC107560715,LOC107655562 coding upstream 74142 9559911 ~ 9593266 (-)
asb13a.1 LOC108279822,LOC108436003 coding upstream 108689 9594458 ~ 9600035 (-)
gdi2 gdi2,LOC108279819,LOC108436005,LOC107754057,LOC107560733,LOC107694307 coding upstream 114808 9600577 ~ 9615300 (-)
ankrd16 ankrd16 coding upstream 131639 9617408 ~ 9623595 (-)
trnay-gua_2 NA coding upstream 136764 9622533 ~ 9622619 (-)
G279620 NA non-coding downstream 119 9484093 ~ 9484948 (-)
G279592 NA non-coding downstream 95320 9386133 ~ 9389747 (-)
G279588 NA non-coding downstream 147537 9336336 ~ 9337530 (-)
G279382 NA non-coding downstream 291064 9193616 ~ 9194003 (-)
LOC113532431 NA non-coding downstream 675729 8809220 ~ 8809338 (-)
G279624 net1 non-coding upstream 32217 9517986 ~ 9519727 (-)
G279625 NA non-coding upstream 34064 9519833 ~ 9520078 (-)
G279641 NA non-coding upstream 47453 9533222 ~ 9533421 (-)
G279728 NA non-coding upstream 138830 9624599 ~ 9625119 (-)
G279730 NA non-coding upstream 141568 9627337 ~ 9629153 (-)
G279415 NA other downstream 276504 9207351 ~ 9208563 (-)
G278912 NA other downstream 1265387 8218561 ~ 8219680 (-)
G278634 NA other downstream 1416990 8053088 ~ 8068077 (-)
avpr1ab LOC108279517 other downstream 1514496 7966819 ~ 7970571 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other downstream 1984988 7421988 ~ 7500079 (-)
cracr2ab LOC108280118 other upstream 392712 9878481 ~ 9892386 (-)
LOC113532274 NA other upstream 770203 10255972 ~ 10296198 (-)
si:ch211-51e12.7 LOC108280090 other upstream 1509336 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 1593399 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 1753166 11238935 ~ 11259412 (-)

Expression


Co-expression Network