G279641


Basic Information

Item Value
gene id G279641
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9533222 ~ 9533421 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU331457
tagccatcacaatttggtccttgtcaaagtcactctgatcgttacgcttgcccatttttcctgcttctaacacatcaacttcgagaactgactgttcacttgatGTGTACATgggaagtggtggctcagtggttaaggacaTGAGTTTAAATGCCAGCTATGCCAAGCTACCACAGTTGTTCCTTTGAGCAAGAtcttta

Function

GO:

id name namespace
GO:0038003 opioid receptor signaling pathway biological_process
GO:0038023 signaling receptor activity molecular_function
GO:0060089 molecular transducer activity molecular_function
GO:0071855 neuropeptide receptor binding molecular_function
GO:0031841 neuropeptide Y receptor binding molecular_function
GO:0031843 type 2 neuropeptide Y receptor binding molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU331457 True 200 lncRNA 0.44 1 9533222 9533421

Neighbor

gene id symbol gene type direction distance location
mkln1 mkln1,LOC107754054,LOC107655615,LOC107560731,LOC107757245,LOC107587826 coding downstream 109954 9392029 ~ 9423268 (-)
LOC113531956 LOC108279597,LOC108279598 coding downstream 174172 9350878 ~ 9359050 (-)
LOC113532331 LOC108279597,LOC108279598,LOC105020203,LOC105912087 coding downstream 186176 9338768 ~ 9347046 (-)
parietopsin LOC108279599 coding downstream 241813 9289095 ~ 9291409 (-)
tspan12 tspan12,LOC107592202,LOC107656244,LOC107565667,LOC107658802 coding downstream 344287 9167589 ~ 9188935 (-)
asb13a.2 asb13a.2,LOC108280001,LOC108436004,LOC103022068,LOC107754063,LOC107560715,LOC107655562 coding upstream 26490 9559911 ~ 9593266 (-)
asb13a.1 LOC108279822,LOC108436003 coding upstream 61037 9594458 ~ 9600035 (-)
gdi2 gdi2,LOC108279819,LOC108436005,LOC107754057,LOC107560733,LOC107694307 coding upstream 67156 9600577 ~ 9615300 (-)
ankrd16 ankrd16 coding upstream 83987 9617408 ~ 9623595 (-)
trnay-gua_2 NA coding upstream 89112 9622533 ~ 9622619 (-)
G279625 NA non-coding downstream 13144 9519833 ~ 9520078 (-)
G279624 net1 non-coding downstream 13495 9517986 ~ 9519727 (-)
G279621 NA non-coding downstream 47453 9485067 ~ 9485769 (-)
G279620 NA non-coding downstream 48274 9484093 ~ 9484948 (-)
G279592 NA non-coding downstream 143475 9386133 ~ 9389747 (-)
G279728 NA non-coding upstream 91178 9624599 ~ 9625119 (-)
G279730 NA non-coding upstream 93916 9627337 ~ 9629153 (-)
G279832 NA non-coding upstream 270757 9804178 ~ 9804403 (-)
G279967 NA non-coding upstream 413910 9947331 ~ 9947536 (-)
G280002 NA non-coding upstream 470920 10004341 ~ 10004812 (-)
G279415 NA other downstream 324659 9207351 ~ 9208563 (-)
G278912 NA other downstream 1313542 8218561 ~ 8219680 (-)
G278634 NA other downstream 1465145 8053088 ~ 8068077 (-)
avpr1ab LOC108279517 other downstream 1562651 7966819 ~ 7970571 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other downstream 2033143 7421988 ~ 7500079 (-)
cracr2ab LOC108280118 other upstream 345060 9878481 ~ 9892386 (-)
LOC113532274 NA other upstream 722551 10255972 ~ 10296198 (-)
si:ch211-51e12.7 LOC108280090 other upstream 1461684 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 1545747 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 1705514 11238935 ~ 11259412 (-)

Expression


Co-expression Network