G279730


Basic Information

Item Value
gene id G279730
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9627337 ~ 9629153 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU331548
tgactggtcagcTGAATTGAATGTGATGTCAATAACTCAAATACATGTCTATAAATAATAGTAagagtaatagtaatagtataaaTTTGAATCTAACAATTATTTGAACAGATTggtttttataataattataataaaaatgagttgtgagtggaaagttcaggaataaaaagctatCTGGCTTCTAATCTTCTAAtcaaatatattaatgttaaaatattattgaacacatttaaataatgagcctaatattatATAGTTCATAAAATATGAACTGAAAGGATCTGCTTGGCAAATGCTCACATAAGTGGAGTGAAGATCAGGACTGGGTCTGTTTTGTTTACTGGATATTAATCAAGTTAAACtcagtgtctttatttttttttgaaactctGTTGCCATAATCTGAATGCAGAAGTGTGCACTTACATAATGCGCCATGTGTAAggtattttgttgttttttaaactaCTTCAACTTTCACAGTCTTGATTAGTGGATGCCATAGTCATTACAGTCATTAACCTGGATATATCAAAACCAGACTCATCAGTTCATTTGGTACAGGAATACATATTTGAAGGCCTGGTTATGGGGAACTTTGAATCTGTGCCATACTTTGGCCATATCCACAGGATGTAAGCAATTCTATGCAACCTAAATGCATCTGGTATATCAACTATTTATGTGTCAGAGAAAGCATTATGAATAAGaactcttttttatatttttctatgcTTTtatgtatgctttttttttgtttgtttttttttttttttatttaatgcctGATTACTCAAAATCTTATGGCTATGAgatttatgttatgttatgctgCACTACTATAAAGATAACACATTGAACCTTTACATTCCATCCAAGAGCTAGTTTCCAAGAAAGATCAGATGTACATACAGTAACATTAATATCGACATGTCTTGTGGTGAGTGATGTAcattgtgtgtttacaaagGTCTTGTGAGTCCTTTTCACATTTAAACATAGTCATATCAATTAGCTGAGTTTATTGCCCATGTcatgtatgaaatattttttataacattcatgTACAAACATGTTATGCATCAACTGCTCTTATGAAAAAATAGTCCATGCATATGTTTTCTCTAtccaaatattaatattcatatctaATCACGCTCCTGCTTTGAAGATTCAGTGCATGTTTTCCCCACTTCACCACTGACATAGTAAAAAAAGAGTATTTCTTatcctgtaaataaaacaagctTTCTTTTATACACATAGGATCTTTTGTTAATTTTCCAGTTCAGTACAAAGCATGTTTGAAAGCAAACAGTGGAGTAAGAGAGACTCTCCTGACACTCTTGAAAACATGCACTAAGTGGAAGGATAATCTCCACGCTTGCCTATGACCAACCTGACCCAACCTGCACAACAGACACAGAATTAAACTGTGGTGAGAAACTTGACCCTGTTCACGCTGGTAGTATCAGGACACCTGTGATGTATTCACTTTGGATGTTGCATGTTTTGTTGGTGATTTGTTCATACTATTTTTGTGTCCAGATTCTGCTCTACAATAAGAAAGACAACGCGACTATGGGGGGgaaaataactgaaattatTATCTAAAGATGTATGCTGACTGTACAAAGATATGCTTGTATAATCTGTCTGGTTTTCCACTCAAtgtaaactgaaaaacaaacaaaaaaaatctaatgtcaTGGTTTTTGTGGTTGTACACAAACGGTATTGATAAATTATGCAAATTGTGCTGTACAAAAGGCTGTTGCCCTAAATAgtctaaatattaaataatatatggaAAA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG:

id description
ko04721 Synaptic vesicle cycle

RNA

RNA id representative length rna type GC content exon number start site end site
TU331548 True 1817 lncRNA 0.32 1 9627337 9629153

Neighbor

gene id symbol gene type direction distance location
ankrd16 ankrd16 coding downstream 3742 9617408 ~ 9623595 (-)
trnay-gua_2 NA coding downstream 4718 9622533 ~ 9622619 (-)
gdi2 gdi2,LOC108279819,LOC108436005,LOC107754057,LOC107560733,LOC107694307 coding downstream 12037 9600577 ~ 9615300 (-)
asb13a.1 LOC108279822,LOC108436003 coding downstream 27302 9594458 ~ 9600035 (-)
asb13a.2 asb13a.2,LOC108280001,LOC108436004,LOC103022068,LOC107754063,LOC107560715,LOC107655562 coding downstream 34071 9559911 ~ 9593266 (-)
pcloa pclo,pcloa coding upstream 178 9629331 ~ 9698196 (-)
sema3aa LOC108280003,LOC108436009,LOC103023715,LOC107562295,LOC107757236,LOC107560735,LOC107694310 coding upstream 78297 9707450 ~ 9742678 (-)
tspan11 tspan11,LOC108279944,LOC107720401,LOC107593980,LOC107560736,LOC107694254,LOC108436010,LOC107690651 coding upstream 126432 9755585 ~ 9854329 (-)
ccdc59 ccdc59 coding upstream 265932 9895085 ~ 9897952 (-)
pik3cg pik3cg,LOC107656384,LOC107590535,LOC107658948,LOC107583938,LOC107705338 coding upstream 378045 10007198 ~ 10015790 (-)
G279728 NA non-coding downstream 2218 9624599 ~ 9625119 (-)
G279641 NA non-coding downstream 93916 9533222 ~ 9533421 (-)
G279625 NA non-coding downstream 107259 9519833 ~ 9520078 (-)
G279624 net1 non-coding downstream 107610 9517986 ~ 9519727 (-)
G279621 NA non-coding downstream 141568 9485067 ~ 9485769 (-)
G279832 NA non-coding upstream 175025 9804178 ~ 9804403 (-)
G279967 NA non-coding upstream 318178 9947331 ~ 9947536 (-)
G280002 NA non-coding upstream 375188 10004341 ~ 10004812 (-)
G280228 NA non-coding upstream 448933 10078086 ~ 10078356 (-)
G280233 NA non-coding upstream 458696 10087849 ~ 10088120 (-)
G279415 NA other downstream 418774 9207351 ~ 9208563 (-)
G278912 NA other downstream 1407657 8218561 ~ 8219680 (-)
G278634 NA other downstream 1559260 8053088 ~ 8068077 (-)
avpr1ab LOC108279517 other downstream 1656766 7966819 ~ 7970571 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other downstream 2127258 7421988 ~ 7500079 (-)
cracr2ab LOC108280118 other upstream 249328 9878481 ~ 9892386 (-)
LOC113532274 NA other upstream 626819 10255972 ~ 10296198 (-)
si:ch211-51e12.7 LOC108280090 other upstream 1365952 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 1450015 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 1609782 11238935 ~ 11259412 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G2370893 NA non-coding NW_023493882.1 JAAXML020000304.1 37791 ~ 41975 (-)