G280228


Basic Information

Item Value
gene id G280228
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10078086 ~ 10078356 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU332117
ctgaaaggctacacttcaatcacatcttgattgcttcatttcaactgtccaaatacttatggacctgactgtatcttTCTTTAAAAGTTGAAGTTTATACTGTCATtttatgtagtgtgtgttattgctgaTTCCTATTATATGAACATGAACTctgatgtattattattattattattattattattattattattatgctaggCAATTTTTATAGTTGTTTTTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU332117 True 228 lncRNA 0.26 2 10078086 10078356

Neighbor

gene id symbol gene type direction distance location
pik3cg pik3cg,LOC107656384,LOC107590535,LOC107658948,LOC107583938,LOC107705338 coding downstream 62296 10007198 ~ 10015790 (-)
ccdc59 ccdc59 coding downstream 180134 9895085 ~ 9897952 (-)
tspan11 tspan11,LOC108279944,LOC107720401,LOC107593980,LOC107560736,LOC107694254,LOC108436010,LOC107690651 coding downstream 223757 9755585 ~ 9854329 (-)
sema3aa LOC108280003,LOC108436009,LOC103023715,LOC107562295,LOC107757236,LOC107560735,LOC107694310 coding downstream 335408 9707450 ~ 9742678 (-)
pcloa pclo,pcloa coding downstream 379890 9629331 ~ 9698196 (-)
lmod2b lmod2,lmod2b,LOC108411152,LOC101068860,LOC103382826 coding upstream 369309 10447665 ~ 10450902 (-)
asb15b LOC108280075 coding upstream 373222 10451578 ~ 10461046 (-)
ptprz1b LOC108280061,LOC108435099 coding upstream 392180 10470536 ~ 10512149 (-)
slc13a4 slc13a4,LOC107656439 coding upstream 454425 10532781 ~ 10548341 (-)
LOC113532144 best3 coding upstream 540562 10618918 ~ 10629763 (-)
G280002 NA non-coding downstream 73274 10004341 ~ 10004812 (-)
G279967 NA non-coding downstream 130550 9947331 ~ 9947536 (-)
G279832 NA non-coding downstream 273683 9804178 ~ 9804403 (-)
G279730 NA non-coding downstream 448933 9627337 ~ 9629153 (-)
G279728 NA non-coding downstream 452967 9624599 ~ 9625119 (-)
G280233 NA non-coding upstream 9493 10087849 ~ 10088120 (-)
G280384 NA non-coding upstream 340562 10418918 ~ 10513153 (-)
G280389 NA non-coding upstream 352275 10430631 ~ 10435846 (-)
G280398 NA non-coding upstream 385598 10463954 ~ 10465630 (-)
G280360 NA non-coding upstream 390330 10468686 ~ 10470375 (-)
cracr2ab LOC108280118 other downstream 185700 9878481 ~ 9892386 (-)
G279415 NA other downstream 869523 9207351 ~ 9208563 (-)
G278912 NA other downstream 1858406 8218561 ~ 8219680 (-)
G278634 NA other downstream 2010009 8053088 ~ 8068077 (-)
avpr1ab LOC108279517 other downstream 2107515 7966819 ~ 7970571 (-)
LOC113532274 NA other upstream 177616 10255972 ~ 10296198 (-)
si:ch211-51e12.7 LOC108280090 other upstream 916749 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 1000812 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 1160579 11238935 ~ 11259412 (-)
G281074 rad51ap1 other upstream 1507948 11586304 ~ 11588024 (-)

Expression


Co-expression Network