LOC113532274


Basic Information

Item Value
gene id LOC113532274
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10255972 ~ 10296198 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU332242
TAGATGCGACTGATTTGTGACAATTGTTAGCCTCGGAGCTTCTTTAAAAGCACGGCGTTGGCGATGCTAAGgAGTTGGGGGACGCCGGCAGGGAGGCTTGGCACCGGGTGGCTGGgtacctgtgtttgtgtgtgtttcacctttCTGGCAGTGTAGTGTCACCTGGGTGTGctgtgcagtgtatgtgtgcgctTCACGTGTGGTCTTTTTGGACCCTCCTTCCAGATCGCCTCCCTGTGGTAAGCCCCTGTcctattttatgtgtgtgttctgtcctg
>TU332243
TAGATGCGACTGATTTGTGACAATTGTTAGCCTCGGAGCTTCTTTAAAAGCACGGCGTTGGCGATGCTAAGgAGTTGGGGGACGCCGGCAGGGAGGCTTGGCACCGGGTGGCTGGgtacctgtgtttgtgtgtgtttcacctttCTGGCAGTGTAGTGTCACCTGGGTGTGctgtgcagtgtatgtgtgcgctTCACGTGTGGTCTTTTTGGACCCTCCTTCCAGATCGCCTCCCTGTGctttttcacagtttttacgccggatgccctacCTGACGCAACTCTATCCAATTTTATCCTGGCTTgtgaccagcactgagagcgcactgctGCACGCAAGCCCAGTGCCTGAGGTTGGTTGGACCCTAGAAGTTATTAATGAGAATAAAAGGGTTGCGGCAGATCCAGAGCCTACTGATCTTCGCCAATCCACCTTGTGGGAGGAaactgtgggaggaaactggagaactctgAGGAAACCCAGACACAGATACAGTAACCGGAGCTCTGGGTCAAACCGGGGAAGCTCGAGG
>XR_004579870.1
TTGTAGTGGATAGATGTTGAGGTGCCTGTGTCTTTAAGCTACAGCAACGGTGTTGTGTCGCACCTGTATGACATCACTAGATGCGACTGATTTGTGACAATTGTTAGCCTCGGAGCTTCTTTAAAAGCACGGCGTTGGCGATGCTAAGgAGTTGGGGGACGCCGGCAGGGAGGCTTGGCACCGGGTGGCTGGgtacctgtgtttgtgtgtgtttcacctttCTGGCAGTGTAGTGTCACCTGGGTGTGctgtgcagtgtatgtgtgcgctTCACGTGTGGTCTTTTTGGACCCTCCTTCCAGATCGCCTCCCTGTGctttttcacagtttttacgccggatgccctacCTGACGCAACTCTATCCAATTTTATCCTGGCTTgtgaccagcactgagagcgcactgctGCACGCAAGCCCAGTGCCTGAGGTTGGTTGGACCCTAGAAGTTATTAATGAGAATAAAAGGTGTCTGAGGACTTACTGTGATTGGCCACTGCAGAACAGTCATTACAGACACAGCCCAGAGGTTAAATAGACACTCCAAAACTCAACCATGCAAAATTGTCGAGTGGAATATTTATGGAAACATTCTATTTGAATGAGGCCTGCCCTTTTCTGCAAGGAAACGTAATCCATCCAGGACACACAGTGAATAAGTATACAGAAAATGTTATCTTTCTGCACAGTTAAAGTAAAAATTAATGCACCTTTTGACAAAGAATAAGATGAAAAGTCAGGTTTCCAAAGACATGTAAATGTTTGTTAACAGTGGCTTGCTAAATGTtgttaaatggataaaactttCATGGCATCTTTTCTTCCTCAGATACGAGTACAAATTagttccaacacacacacacacacacacacacacacacacacacacacacacatacacatgaatACAAAACCGACActcacacaaatatacactcGTGTCAAGAGTGCTATTGTACCGTGCCCTCATCTGACTCCATTAACGGAAAGTGGTTGGGATCGTGACCTACACATCATTAACAAGATGTGGTCCCGTTGCCGCAGTGTGTGAGACGAACACAGaagaggtaatatcattaactgtCTTGTTAGATACCCCTCCCCCACACAGAATGTTCATAGAGTGAGCATGGGGCatcgtgattcctgccccagtgggccaATGTTAGCTTGCATTGCTGTTCCCATttgttcccatttttgaccactagttGCAATAATAGCTCTACTGAACTAAACAGGGCACACAGCATGCTCCCCCATGATTGTGCAACATTTAGGAATGGTAAATAAATCAATAGAACATCAGCTTATATCcgtcaaataacattttttaaatcattggaGTAAATGCCACACAGACAGTCACCTgggctcaggattgaaccctggAGCTTTGAGGAGCACTCCACTATGCGTTTGTATCATATAATGTGAATTGTATTATTCTATTAAGCAAAGAAAATGAGGAAGTggtataaaattttataataaatattttgttttagacctgtttttatttactgaaaaaaaataaccagTAGTCATTTCTTGGCATTTATATTCTGCTGGACAATATGTCATAACCCGAGGGAGCCACAGAATAATCTCCTTACAGGAATATCAACTGAGGACACTTTGTGCTTGTTTGACGTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU332242 False 278 lncRNA 0.54 2 10295004 10296121
TU332243 False 532 TUCP 0.53 4 10269757 10296121
XR_004579870.1 True 1657 lncRNA 0.43 6 10255972 10296198

Neighbor

gene id symbol gene type direction distance location
pik3cg pik3cg,LOC107656384,LOC107590535,LOC107658948,LOC107583938,LOC107705338 coding downstream 240182 10007198 ~ 10015790 (-)
ccdc59 ccdc59 coding downstream 358020 9895085 ~ 9897952 (-)
tspan11 tspan11,LOC108279944,LOC107720401,LOC107593980,LOC107560736,LOC107694254,LOC108436010,LOC107690651 coding downstream 401643 9755585 ~ 9854329 (-)
sema3aa LOC108280003,LOC108436009,LOC103023715,LOC107562295,LOC107757236,LOC107560735,LOC107694310 coding downstream 513294 9707450 ~ 9742678 (-)
pcloa pclo,pcloa coding downstream 557776 9629331 ~ 9698196 (-)
lmod2b lmod2,lmod2b,LOC108411152,LOC101068860,LOC103382826 coding upstream 151467 10447665 ~ 10450902 (-)
asb15b LOC108280075 coding upstream 155380 10451578 ~ 10461046 (-)
ptprz1b LOC108280061,LOC108435099 coding upstream 174338 10470536 ~ 10512149 (-)
slc13a4 slc13a4,LOC107656439 coding upstream 236583 10532781 ~ 10548341 (-)
LOC113532144 best3 coding upstream 322720 10618918 ~ 10629763 (-)
G280233 NA non-coding downstream 167852 10087849 ~ 10088120 (-)
G280228 NA non-coding downstream 177616 10078086 ~ 10078356 (-)
G280002 NA non-coding downstream 251160 10004341 ~ 10004812 (-)
G279967 NA non-coding downstream 308436 9947331 ~ 9947536 (-)
G279832 NA non-coding downstream 451569 9804178 ~ 9804403 (-)
G280384 NA non-coding upstream 122720 10418918 ~ 10513153 (-)
G280389 NA non-coding upstream 134433 10430631 ~ 10435846 (-)
G280398 NA non-coding upstream 167756 10463954 ~ 10465630 (-)
G280360 NA non-coding upstream 172488 10468686 ~ 10470375 (-)
G280527 NA non-coding upstream 480565 10776763 ~ 10777897 (-)
cracr2ab LOC108280118 other downstream 363586 9878481 ~ 9892386 (-)
G279415 NA other downstream 1047409 9207351 ~ 9208563 (-)
G278912 NA other downstream 2036292 8218561 ~ 8219680 (-)
G278634 NA other downstream 2187895 8053088 ~ 8068077 (-)
avpr1ab LOC108279517 other downstream 2285401 7966819 ~ 7970571 (-)
si:ch211-51e12.7 LOC108280090 other upstream 698907 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 782970 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 942737 11238935 ~ 11259412 (-)
G281074 rad51ap1 other upstream 1290106 11586304 ~ 11588024 (-)
G281092 mansc1 other upstream 1361692 11657890 ~ 11660327 (-)

Expression


Co-expression Network