G280384


Basic Information

Item Value
gene id G280384
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10418918 ~ 10513153 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU332301
ccttctctctctctctctctctctctctctctctctcactcagccTCCGCTCCTGATCCACAATCACAGCAACAAATATAACCACAGACACCAAATCTGATCATTGACTCAATCAGCGCCTCTTGCTGTCCGACTTCATTTGAAGGTCTGTTTCGGTCAAgcccaatttaaaaaaaaagttctgtggTAGTCCAGAAGCCTAGTTTTTCCCCATAGGATCCTGTGGATCTCTCAAGACTCGGAACTCATCACAACTCCACTGGATCCAGCAACATGGCAGCGTCCGAGCACAGCAGAGGCACTCACACGACCGGGAGAAAGTCCGTGTGAACTGAAAAGGGATACAAGTCAGTCATATGTCAGGGGCTGTTCAACACACACGATTACACGACAGACACGATTAcagcctgcctctctctctctctctctctctctctctcactcacacacacgtacttCCGTAAGCTGATCGCGTCAGTAAGAAGGATAGTGGGCGGAGCCAAGTGAGTCAACCCGGGATGACGCGTCATGTCAATCAACCCAGGAACTCTCAAACAGATGCCTAGAAATAAAGTCACTAAAAAGGTCCTTAAATTTTATGGAGAACTACTGTACAATGTCATGCCCTGACTCTACATCCCCAAATATTATGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU332301 True 653 lncRNA 0.48 2 10418918 10513153

Neighbor

gene id symbol gene type direction distance location
pik3cg pik3cg,LOC107656384,LOC107590535,LOC107658948,LOC107583938,LOC107705338 coding downstream 403128 10007198 ~ 10015790 (-)
ccdc59 ccdc59 coding downstream 520966 9895085 ~ 9897952 (-)
tspan11 tspan11,LOC108279944,LOC107720401,LOC107593980,LOC107560736,LOC107694254,LOC108436010,LOC107690651 coding downstream 564589 9755585 ~ 9854329 (-)
sema3aa LOC108280003,LOC108436009,LOC103023715,LOC107562295,LOC107757236,LOC107560735,LOC107694310 coding downstream 676240 9707450 ~ 9742678 (-)
pcloa pclo,pcloa coding downstream 720722 9629331 ~ 9698196 (-)
slc13a4 slc13a4,LOC107656439 coding upstream 19628 10532781 ~ 10548341 (-)
LOC113532144 best3 coding upstream 105765 10618918 ~ 10629763 (-)
ptprb ptprb,LOC107562139 coding upstream 271175 10784328 ~ 10828385 (-)
ptprr ptprr coding upstream 317733 10830886 ~ 10885436 (-)
rab21 rab21,zgc:154045,LOC106609839,LOC107690748 coding upstream 400481 10913634 ~ 10928416 (-)
G280233 NA non-coding downstream 330798 10087849 ~ 10088120 (-)
G280228 NA non-coding downstream 340562 10078086 ~ 10078356 (-)
G280002 NA non-coding downstream 414106 10004341 ~ 10004812 (-)
G279967 NA non-coding downstream 471382 9947331 ~ 9947536 (-)
G279832 NA non-coding downstream 614515 9804178 ~ 9804403 (-)
G280527 NA non-coding upstream 263610 10776763 ~ 10777897 (-)
G280615 NA non-coding upstream 270208 10783361 ~ 10784293 (-)
G280640 NA non-coding upstream 393020 10906173 ~ 10908630 (-)
G280652 NA non-coding upstream 417585 10930738 ~ 10930980 (-)
G280812 NA non-coding upstream 656733 11169886 ~ 11172446 (-)
LOC113532274 NA other downstream 122720 10255972 ~ 10296198 (-)
cracr2ab LOC108280118 other downstream 526532 9878481 ~ 9892386 (-)
G279415 NA other downstream 1210355 9207351 ~ 9208563 (-)
G278912 NA other downstream 2199238 8218561 ~ 8219680 (-)
G278634 NA other downstream 2350841 8053088 ~ 8068077 (-)
si:ch211-51e12.7 LOC108280090 other upstream 481952 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 566015 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 725782 11238935 ~ 11259412 (-)
G281074 rad51ap1 other upstream 1073151 11586304 ~ 11588024 (-)
G281092 mansc1 other upstream 1144737 11657890 ~ 11660327 (-)

Expression


Co-expression Network