G280398


Basic Information

Item Value
gene id G280398
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10463954 ~ 10465630 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU332320
TACTGTAAGAGAAAAGCAGTTGCCACAAATAACACCCTGAATTCCGCCAGCACACAATTCGCTCGTCACTATAATACACTCTGATCACAATGTACACAATCTACTTACTGTACACAatctactgtctctctctctgtcaagctgtACGTgcactcctgctgcctgatcCAGACACGCTTCTACTGCTGTGACTCCTCTCTCTTCCATAACTGCCTGATTCCATCCTGATGCTTGTGACTCACTTTCTACTGGTGTAGATGGTTCCActtggataccctaaagattttCACTTCCCTAAAACAGTTTATATCCAAGTCTCAGCCTTGcttcaggaaaataatctcACCTTCATATTGTAGACTTACTGTAGACCtcagtgctgctgctgtaatcagaaAGACTGTCCTGtcctcatcccaggactcttattcacactATGACCATCATATCAACACACTTACTACTGCTTGCCTTTACTTTTCTATAGCTGCAATGATTTTTcactgtcacccagaagaggatgagttctcttttgagtctcgttcctctaaaggtttcttccttcatgctgtctgggttttttttcccccctggcCACTGTCGCCtttggtttgctcattaggaatctaaGAAGAAGTCGACATCcagatttctctaaagctgcctTGTTACAGTCTAAACTGTTTaagaacaaataaaactgaaattaatcTAATTAATAGCATGTAAACTGCTGGGCTGTACTTCTGTATACTGGGATGGAACAAGAGGGAAGGCACAACGaacacacactcctgtacagtTTAATGTGCTGGCGCATAAGCCACTGTGCTTTACTTTCAGTAACACTGGGAGAGCACAACACTATGACCCTCTCTCTGTTCACACCACAAGTCCACTGTTCTGCACATTTTAGAGTTTTCGCTGCTCTGACACATAAACACTCCAATTCAGGAAGAGCTGTTAAtcagctgattagttgaatcaggtttGTTGGGCGAAGGGAGAAAAACTACAATGTGCAGGACAAGACAGGACAGGACAAGACAGGGGGTACTCCCAGACCAGGGACGGGAACCTGTGAACTACACCATGAACAAAATGAGCATACTGCagatcataaaatataaaacaatctTCCTGGAGCTAGAAGGATATCAAAGCTGTTTATACTCCAAATCAGTTTACATCCTTGACATATATTAGAATGTAATTAATTTTGCATTATCTGCAGGAAGCCTTTAAGGAAGCCATGGAAATGAATTCAGATTTAATTAAACTTACCTAAAAACAAAACTCTTGCATAGTAccatattatttatttcctcaATGCTTGTCCAAACTAATATTTGTCCCTACACTGCACAGTCTACTTTGTTTATAAAACTGCAAACACCgctttgtttgattgtttgttttttaactacTGTCTATATGGAGTTTTCCAGCGTTTTATTAtactacagctctgtcatttAGTTAATACTCCACCCCAGTATTCCTGCAGGAAAAGAGGACAAAACATGAGCGTCCTGCACAAAACCTGCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU332320 True 1549 lncRNA 0.41 2 10463954 10465630

Neighbor

gene id symbol gene type direction distance location
asb15b LOC108280075 coding downstream 2908 10451578 ~ 10461046 (-)
lmod2b lmod2,lmod2b,LOC108411152,LOC101068860,LOC103382826 coding downstream 13052 10447665 ~ 10450902 (-)
pik3cg pik3cg,LOC107656384,LOC107590535,LOC107658948,LOC107583938,LOC107705338 coding downstream 448164 10007198 ~ 10015790 (-)
ccdc59 ccdc59 coding downstream 566002 9895085 ~ 9897952 (-)
tspan11 tspan11,LOC108279944,LOC107720401,LOC107593980,LOC107560736,LOC107694254,LOC108436010,LOC107690651 coding downstream 609625 9755585 ~ 9854329 (-)
ptprz1b LOC108280061,LOC108435099 coding upstream 4906 10470536 ~ 10512149 (-)
slc13a4 slc13a4,LOC107656439 coding upstream 67151 10532781 ~ 10548341 (-)
LOC113532144 best3 coding upstream 153288 10618918 ~ 10629763 (-)
ptprb ptprb,LOC107562139 coding upstream 318698 10784328 ~ 10828385 (-)
ptprr ptprr coding upstream 365256 10830886 ~ 10885436 (-)
G280389 NA non-coding downstream 28108 10430631 ~ 10435846 (-)
G280233 NA non-coding downstream 375834 10087849 ~ 10088120 (-)
G280228 NA non-coding downstream 385598 10078086 ~ 10078356 (-)
G280002 NA non-coding downstream 459142 10004341 ~ 10004812 (-)
G279967 NA non-coding downstream 516418 9947331 ~ 9947536 (-)
G280360 NA non-coding upstream 3056 10468686 ~ 10470375 (-)
G280527 NA non-coding upstream 311133 10776763 ~ 10777897 (-)
G280615 NA non-coding upstream 317731 10783361 ~ 10784293 (-)
G280640 NA non-coding upstream 440543 10906173 ~ 10908630 (-)
G280652 NA non-coding upstream 465108 10930738 ~ 10930980 (-)
LOC113532274 NA other downstream 167756 10255972 ~ 10296198 (-)
cracr2ab LOC108280118 other downstream 571568 9878481 ~ 9892386 (-)
G279415 NA other downstream 1255391 9207351 ~ 9208563 (-)
G278912 NA other downstream 2244274 8218561 ~ 8219680 (-)
G278634 NA other downstream 2395877 8053088 ~ 8068077 (-)
si:ch211-51e12.7 LOC108280090 other upstream 529475 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 613538 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 773305 11238935 ~ 11259412 (-)
G281074 rad51ap1 other upstream 1120674 11586304 ~ 11588024 (-)
G281092 mansc1 other upstream 1192260 11657890 ~ 11660327 (-)

Expression


Co-expression Network