G280615


Basic Information

Item Value
gene id G280615
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10783361 ~ 10784293 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU332558
ttcttcaataacagcacaccccccaaagtgttttatttctttactgcAATTTGCTAACAaccattaaaaatttttattcataaaaaaaaccacatactttatatccatttttagatacctttaatgttgtggaccatcTACGAAACAGGTTCTTTGTAATTCAGAATGGATtataatgtgaaagtgtttttcttGTTCCCGTAGTTACAGGGATAAAGCTAAAGGTGTTGAAGAGTGTTGAAGATGCACGCAGTGTAAAGACTGCTGCGTTTGGAAATGTGGTCAGTCTATGATCAGTTTCTGTCATGGAGGTGGAAACGTATTGTTGTTTTCAGAAATCCTTTTAATGTAGCCTCTTTCACAAACCATTTATAAGCTGTGTATGCTGAACTATGTTCTCTGCTGTAAGCAATAATACTGaggatataatatttttattattcagatTGTGATACTCTTTCTATGTACTGTAGACACAATATAGACGTTTtccagaggtttttttttttttttaatgtagtgtgATGTCAGTACATccagtatttctataacttaCATTGTTTTAAACCTAGAAATTGctatttaaaaacagattttgtgtATATATCTTTTATACTTCCCCTTTTTCCAAATCACACACTTAGGTCTGTATAACATGACTGTAACTTTCATATATGTGAAAAAGAAATGGCTACATACAGTAGCTTTGTATgcaatgaaagagaaaaatatcgggaaaaaaaatattggagATTTTATTTGGCCTAGAAATTGGAGTTGCTTATAAACACTGCACAGACgatatgaatatttattgtgCCCTGTTTTTTAATGTGgcttttataatgaataaacCAGATGCCTCTGTGTGTAAGAGAGTATGAATGTACAATCTCTAGTAcacacttttaataataataaaaaactaacCCT

Function

GO:

id name namespace
GO:0072359 circulatory system development biological_process
GO:0001568 blood vessel development biological_process
GO:0001944 vasculature development biological_process

KEGG:

id description
ko05418 Fluid shear stress and atherosclerosis

RNA

RNA id representative length rna type GC content exon number start site end site
TU332558 True 933 lncRNA 0.32 1 10783361 10784293

Neighbor

gene id symbol gene type direction distance location
LOC113532144 best3 coding downstream 153598 10618918 ~ 10629763 (-)
slc13a4 slc13a4,LOC107656439 coding downstream 235020 10532781 ~ 10548341 (-)
ptprz1b LOC108280061,LOC108435099 coding downstream 271212 10470536 ~ 10512149 (-)
asb15b LOC108280075 coding downstream 322315 10451578 ~ 10461046 (-)
lmod2b lmod2,lmod2b,LOC108411152,LOC101068860,LOC103382826 coding downstream 332459 10447665 ~ 10450902 (-)
ptprb ptprb,LOC107562139 coding upstream 35 10784328 ~ 10828385 (-)
ptprr ptprr coding upstream 46593 10830886 ~ 10885436 (-)
rab21 rab21,zgc:154045,LOC106609839,LOC107690748 coding upstream 129341 10913634 ~ 10928416 (-)
tmem19 tmem19,LOC102798963,LOC106594838 coding upstream 147054 10931347 ~ 10940102 (-)
LOC113532419 lgr5 coding upstream 156825 10941118 ~ 10974696 (-)
G280527 NA non-coding downstream 5464 10776763 ~ 10777897 (-)
G280384 NA non-coding downstream 270208 10418918 ~ 10513153 (-)
G280360 NA non-coding downstream 312986 10468686 ~ 10470375 (-)
G280398 NA non-coding downstream 317731 10463954 ~ 10465630 (-)
G280389 NA non-coding downstream 347515 10430631 ~ 10435846 (-)
G280640 NA non-coding upstream 121880 10906173 ~ 10908630 (-)
G280652 NA non-coding upstream 146445 10930738 ~ 10930980 (-)
G280812 NA non-coding upstream 385593 11169886 ~ 11172446 (-)
G280817 NA non-coding upstream 395638 11179931 ~ 11182051 (-)
G280818 NA non-coding upstream 398773 11183066 ~ 11184143 (-)
LOC113532274 NA other downstream 487163 10255972 ~ 10296198 (-)
cracr2ab LOC108280118 other downstream 890975 9878481 ~ 9892386 (-)
G279415 NA other downstream 1574798 9207351 ~ 9208563 (-)
G278912 NA other downstream 2563681 8218561 ~ 8219680 (-)
G278634 NA other downstream 2715284 8053088 ~ 8068077 (-)
si:ch211-51e12.7 LOC108280090 other upstream 210812 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 294875 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 454642 11238935 ~ 11259412 (-)
G281074 rad51ap1 other upstream 802011 11586304 ~ 11588024 (-)
G281092 mansc1 other upstream 873597 11657890 ~ 11660327 (-)

Expression


Co-expression Network