G280640


Basic Information

Item Value
gene id G280640
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10906173 ~ 10908630 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU332595
tttattgaattttttttggtcTATACACATACAAAGTAGGCCTACTGtgcacatttattttctgtattctgtaatgaagaaatgaaaaaataatgaaaatatgaaaataattactATATTGAATATCAAACAGTACATAAaccaataaaacattaaatcaaataatctattttcatatttaactCAGTGCACCTtggtgtaattttttaaaaaaaacagtacgtGGCTTCAGGCATCTTGGAGAACTTCCTTGATGACGTTTTTATCAGAAACATAGTCTATTTCTTAATATggcacattatttaataaaatacaaagtctgtaaaataacattaacacactaataGAGTAGGCATAAAATAGGCATGTAAGTAagaacatttatataaaaatgtaatgtgcCTAAGACATGAAAtgttaaactttattttataaccAAACTGTTTCCAGATTATAGAGAGGTTTAGAAAAGTATTCTgacctcttacacacacacacagggtgagGTACACTGGATCTGATACactgagaaaataaatgtttttaacgtgtgtttaaaaaatagaaagaaaaatcactATAGCCAATATATGATACAATATATAGCAAAAAATAGTGGATTCTTACACTCTTGTGCTTCTAGCAAAGGGCACACAATGAATCCATAATTTTCTTGATAATTTTACCATTAGTTAGACTCAGTGATGAGAGATCAATCTTATGGCTATATAATAAAGTTTCATCACTCAGGTATGATCAGTCTATAGGCACCAAGTGACCAGGATTTATCTTAGTGTAAGCTAAGACATAGAAAAGACTACAAAATATATCAAATTGTGTATAGTGAGAATATCTGAAGTTCGGTCAAAGACAGGAAAGTAGTACACATTCTAAATTCCAACACACTAAAAAACttagatatataatataaaatatatatataacttttaaAGCCTTTTCAAATGTAAcataaagcagttttttttactCCAGTTTTGTGGACACACTGCCCTACAAAGTAAGAAATGctgacaaaaatatgaaaaggaaatataaaatgtggcCAGTATTATCTATTTACTCCACTTTAACAAAGAGTGAAGGAATGTGGAAGCAGAAGAATGCGGATGTGTGTATGGGACGAAGCGCAACAGTTAAACCCTTAAACCCTGCTTATTCCAGACTGAAGCTGTTCAATTGCTTGGTTAATAATTAACCACCTCTGAGTATTTTGGTGGCTggtatgaaagagagagagatggcagcTGAGCTTGGGCAGGAGCGCTGATACGGATGATCATCGAAAGAGACATCAGACCTCCCAGAatctacagagagaaagaaggggTGTGAAAAGCGATGCTGATATAAGTTAAAGATAAAGATATACTTTGCTTGCTtaagaatgaataaatttggtttatatgtttggATTATAAACCTCTAATGTGTAATAAAAGTAGAAATATTCTTTATGACTGTACATGTAACTTAGTattgttgctttctttattattattctattattttgACTTTAATTTTTGGTTTACCCCCCTCAATAaactcaataaaaatattttttaaaaataattgtacatGTAATATACCATAATATCATACACAAACAATCAGAGTACAAACACACTGAGGACACTGTATTTCTACATCCATTTCATGAAATGAGGCTGGGAAGGATGAAttctgttttaataaatgctcTATACTATGCTATATTCAGTTTAGACTAATAAATGAACATCCTGATACTgggttctcaaacattttcAGACTCTTCCACACTCAAACAATAAGCATCTAAGAGTCTGCTTGTCATCTGAACAAGGTTCCCATGGCTACAATTGGGAAATTTGTGGCAGGGGTTAAACTGTACACACTGTTATGAGAACAGAGCACAGAAAGCCAGAGCAAAGATACAATAGGCACAAAGCCCATGCATGCTTGTGCTAAACTGGAGAAACCTGGAAAGCCCCTGgatttcactttcatttctcTCAAACCTGTGGCTGTTTCTGGGAAAGTCACACTAATGATTCACATGTTAAGCAAATCTTTTGCGCAAACTTGACTTTTCCTTTATTGCACATTAGCAGTGCATTTCTTACCCTGAGTTGGTAGGATTTTTATAACCTCTGCTACAACACAATGTAGGCTTCTGCATAAGTCAGATTTAAAACTGAGACCCGGCTGTATGGAAAAGGCGGCTTTACACATCTAACATTCAAACAACTATGAAGCGGATAAAGCTAACTGTAATGTTATCTGTACCAGCATTTTTTTCTAAGGCGTGTTACCGTCTTGATTAATACCTCCAGGGTTATTATCATAACCAAAAGTACAATGTACTTACAGCCAGAGCTGCCAGGCAGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU332595 True 2390 lncRNA 0.33 2 10906173 10908630

Neighbor

gene id symbol gene type direction distance location
ptprr ptprr coding downstream 20737 10830886 ~ 10885436 (-)
ptprb ptprb,LOC107562139 coding downstream 77788 10784328 ~ 10828385 (-)
LOC113532144 best3 coding downstream 276410 10618918 ~ 10629763 (-)
slc13a4 slc13a4,LOC107656439 coding downstream 357832 10532781 ~ 10548341 (-)
ptprz1b LOC108280061,LOC108435099 coding downstream 394024 10470536 ~ 10512149 (-)
rab21 rab21,zgc:154045,LOC106609839,LOC107690748 coding upstream 5004 10913634 ~ 10928416 (-)
tmem19 tmem19,LOC102798963,LOC106594838 coding upstream 22717 10931347 ~ 10940102 (-)
LOC113532419 lgr5 coding upstream 32488 10941118 ~ 10974696 (-)
msgn1 msgn1 coding upstream 99712 11008342 ~ 11009632 (-)
LOC113531821 gen1 coding upstream 103589 11012219 ~ 11028405 (-)
G280615 NA non-coding downstream 121880 10783361 ~ 10784293 (-)
G280527 NA non-coding downstream 128276 10776763 ~ 10777897 (-)
G280384 NA non-coding downstream 393020 10418918 ~ 10513153 (-)
G280652 NA non-coding upstream 22108 10930738 ~ 10930980 (-)
G280812 NA non-coding upstream 261256 11169886 ~ 11172446 (-)
G280817 NA non-coding upstream 271301 11179931 ~ 11182051 (-)
G280818 NA non-coding upstream 274436 11183066 ~ 11184143 (-)
G280841 NA non-coding upstream 351161 11259791 ~ 11259991 (-)
LOC113532274 NA other downstream 609975 10255972 ~ 10296198 (-)
cracr2ab LOC108280118 other downstream 1013787 9878481 ~ 9892386 (-)
G279415 NA other downstream 1697610 9207351 ~ 9208563 (-)
G278912 NA other downstream 2686493 8218561 ~ 8219680 (-)
G278634 NA other downstream 2838096 8053088 ~ 8068077 (-)
si:ch211-51e12.7 LOC108280090 other upstream 86475 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 170538 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 330305 11238935 ~ 11259412 (-)
G281074 rad51ap1 other upstream 677674 11586304 ~ 11588024 (-)
G281092 mansc1 other upstream 749260 11657890 ~ 11660327 (-)

Expression


Co-expression Network