Gene
RNA
| Item | Value |
|---|---|
| gene id | G280652 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047612.1 |
| NCBI id | CM018558.1 |
| chromosome length | 23372418 |
| location | 10930738 ~ 10930980 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0015018 | galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU332613 | True | 243 | lncRNA | 0.33 | 1 | 10930738 | 10930980 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| rab21 | rab21,zgc:154045,LOC106609839,LOC107690748 | coding | downstream | 2322 | 10913634 ~ 10928416 (-) |
| ptprr | ptprr | coding | downstream | 45302 | 10830886 ~ 10885436 (-) |
| ptprb | ptprb,LOC107562139 | coding | downstream | 102353 | 10784328 ~ 10828385 (-) |
| LOC113532144 | best3 | coding | downstream | 300975 | 10618918 ~ 10629763 (-) |
| slc13a4 | slc13a4,LOC107656439 | coding | downstream | 382397 | 10532781 ~ 10548341 (-) |
| tmem19 | tmem19,LOC102798963,LOC106594838 | coding | upstream | 367 | 10931347 ~ 10940102 (-) |
| LOC113532419 | lgr5 | coding | upstream | 10138 | 10941118 ~ 10974696 (-) |
| msgn1 | msgn1 | coding | upstream | 77362 | 11008342 ~ 11009632 (-) |
| LOC113531821 | gen1 | coding | upstream | 81239 | 11012219 ~ 11028405 (-) |
| agbl5 | agbl5 | coding | upstream | 104104 | 11035084 ~ 11050606 (-) |
| G280640 | NA | non-coding | downstream | 22108 | 10906173 ~ 10908630 (-) |
| G280615 | NA | non-coding | downstream | 146445 | 10783361 ~ 10784293 (-) |
| G280527 | NA | non-coding | downstream | 152841 | 10776763 ~ 10777897 (-) |
| G280360 | NA | non-coding | downstream | 460363 | 10468686 ~ 10470375 (-) |
| G280398 | NA | non-coding | downstream | 465108 | 10463954 ~ 10465630 (-) |
| G280812 | NA | non-coding | upstream | 238906 | 11169886 ~ 11172446 (-) |
| G280817 | NA | non-coding | upstream | 248951 | 11179931 ~ 11182051 (-) |
| G280818 | NA | non-coding | upstream | 252086 | 11183066 ~ 11184143 (-) |
| G280841 | NA | non-coding | upstream | 328811 | 11259791 ~ 11259991 (-) |
| G281021 | NA | non-coding | upstream | 428382 | 11359362 ~ 11359636 (-) |
| LOC113532274 | NA | other | downstream | 634540 | 10255972 ~ 10296198 (-) |
| cracr2ab | LOC108280118 | other | downstream | 1038352 | 9878481 ~ 9892386 (-) |
| G279415 | NA | other | downstream | 1722175 | 9207351 ~ 9208563 (-) |
| G278912 | NA | other | downstream | 2711058 | 8218561 ~ 8219680 (-) |
| G278634 | NA | other | downstream | 2862661 | 8053088 ~ 8068077 (-) |
| si:ch211-51e12.7 | LOC108280090 | other | upstream | 64125 | 10995105 ~ 11007143 (-) |
| sobpb | LOC108279441 | other | upstream | 148188 | 11079168 ~ 11094176 (-) |
| vegfab | vegfa,LOC108435123 | other | upstream | 307955 | 11238935 ~ 11259412 (-) |
| G281074 | rad51ap1 | other | upstream | 655324 | 11586304 ~ 11588024 (-) |
| G281092 | mansc1 | other | upstream | 726910 | 11657890 ~ 11660327 (-) |
