sobpb (LOC108279441)


Basic Information

Item Value
gene id sobpb
gene name LOC108279441
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11079168 ~ 11094176 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU332738
TTTAAATCATGtgtcagaatttttttctgtgcgtgtgtgtttattcagtttaaattaatcaattaatgaTATTTGACAGGTTAGATTCTTGCCTTCTTGTTTTTGGTATAAATGCCTTTGTTGTGTAAATCTTTGTAAATTTTATAAATCTTCCCCATTGGACAACTTCCCCATCGTTTCCTACTACCAAAAGTAGTGCAACATGTTTGGGAAAGAGAAGGCTAATTGCTCAATCTgcataatttataaaaatgtctgtCATTGTCTCTGcaacaactacaaaaaaaaaactgcatcaaCATCACAAACTGTGTTCCTGC
>XM_026922693.2
TGCCGCGTGCACGCGCATAACTCTGCCACACTGTTACCGCTCGCGAGCCAGCGCGTCTTTCTCCGCTTCTTTTCGCCTTCATATACGATGCCAAAGATGGAAAAAGGAAGACCGCCGGAAAGCAAGCGCAGCAGGAAGCCCGCTCATCCCGTCAAGAGAGAGGTCAGCCAAGAGATGAAGagCTTCGCAGAGAGCACAATGAATGAATTGCTGGGTTGGTACGGATATGATAAAGTTGACCTGCAAGACTCAGAGGCCGCTGACATCAGGAATCACAACGGCAGACTAAGACGCCACCAAGTATCTGTGCTTAAAGAGAATTCAGATCCAAAGCCTACTGTAATGGAGAGTAAGCTGACATCTGGCTCCTCTGCGTCGACTAAAAATGGAGTGAAAGATCCTACTGGCTTTCCCCTCTctccttcatcatcctcattcTCAACCCACATGAAGGACCTGCACAGCACCCATGTCGTGGTGCCTCTCATCAAACCATCTGCAGtTGATGAGCAGCAGAATGttcagattgtgtgtgtgtggtgtcagaAGGAGGGGCTTAAACGCTACTCTCTGGTCATGGGCTCTGAACTCAAGAGCTTCTGCAGCGAGAAGTGTTTTGCCATGTGCCGACGAGCCTACTTTAAACGCAACAAGgctcaAAATGAAAATCGGCCTGGTGAACagtcttctcctcctcctggtCAAACGGAGGAAACACCTCCTCAGCTCATGCTTAAGATGAACAGTAACACACGAGTATGTGATTGGTGCAAACACGTGCGTCACACCAAGTACCTGGACTTAGGTGCAGGTGACGACAGACTGCAGTTCTGCAGTACCAAGTGCCTTAACCagtataaaatggacattttctACCGAGAGGCCCGGGCTGCACTCACAACATCTGGCTCTAGTCCGAGCCAACCAGAAAACGAGAATCGTCCAGCCGGAGAGAGTGAGACTCTGCTGACACCAGAATCATGGAACAACCCTTCAATGGAGGGAGACAGCAAAGAAACAGTGTCACCCAAAGTTTCGACGCCTGTgtcatcttcctcttcatcgTCATCCTCAGTTAGAGCATCTGTCTTGGCTCTGCAGAAGGAAAGAGAGTGCCCTGCTTCTTCTCAGCTCCAGACTGGCACTCCAGTGCCGTCTACCCCTCCACCTCATGTTGTTGTAGAACAACCATGGGTGATACAGAAGCCCCCATCCTTTAACCGGGCACCTATCCATGCACAGCCCCGAAACCCAGGATCCAGCCCACACCAGAGACCctcacacacatctccacaggtacacacaccttCCGTTCGCCCACTTCCCCCACCACAGCTCTTACACCCATATGCAGCGTCAATGATGCCCTGTGCACCCACCTACCCTCATCCCATTCCATCACTCATGCCAACTCTGGGTCTGCCATGTCCACAACCTACTGTCCTGGTGCCATATCCGATTGTAGTTCCTCTCCCTGTTCCTGTGCCAATTCCCATACCAATACCAGTGAACTCAGGGGCTTTGGGACATGCTGGGGTTATTCGTAACcacaaggagaaagagaagacagGAAGAGTTGCAGCTTCAGTCACTCCTGAAGATGTAGATAGAGAGCGGATGTCTGAAGATCAGGAGATTACTGATGGCATCTTAGTTGAGCACAAAGTAAAGACTGAGCAGTCTTCATCTCCAGACCCGTATTCTCCTGCTTTCTCATCACATTCTTTCCCAATCTTATCTGCTCATCCACTGGTCAGTCCTACCCCTCCATTGCCAGAAGATCAGAGACAAGAAGTTAGGGAGCGACAGGTGATACAGAGAGCAATGTGCAGAGTGAAGCAGGAAGGTGAAACAGAGTTCGACCTCAATAAGCAGACGGAGGTTGAACAAGAGAATGGATGGGGCAGGAATGGGGATGAAGATGACTTGATTGCACAGCAAATGTCTGCTAAATCTTACACAGGCACTTTAAAGCACACATCCAGTTCAGCCCCTGAAAATGCATCTTCCACAGTGGACTCGCCAAATGCACGAGCTTCAATCATTCTACAGAAAGCACTCAGCACAACATCAGTAGTCACTCCCACAGCGTCTATCCTGTTGAACAACACAGTTGCCACTTCCAATTCAGTTCACTCCGTTTATTCCTCAACATGCATAGCTACAGTTCAGTCAGACCCAGAACAAAGAACAAGCTCTGGCCAAAATTCATCCCCACTTCCTGAATCTGAGGATGTGAAAGAGAACGTCTCAGGAGGGCGGGAGCCTGGTTTAAACTGTTCCCTTCCAGCAGAGCAAACAGACTGCCAAACAGACCAATCAGAAGAGAGCAGGGGGGGAGCTGTAGACAGTGATGCTCTTGCAGCTGACGAACATGCTTACGCATCGATCCATCCCGCCAAAATTACGAGAAAAGAATGCACACACGATCACTCtgacaactgcacacacactttctcacatgGTTACACACAGTTGGGACAAGAGCTCACACATGCATGTGCCCGCTTTCGAGCAAAGTGGTGTGCATACTGAAATAGAGCCGCCTTTGAAGAGGAGATGCCTGAGGATCAGAGACCAGAACAAATGAAGCACAGATCATTTGTGGAGTGAACTTCCTTTTTGTGTATCTGAAGTCAGACACAGAATGCAGGCCTTTCCCTTGGTGCTGGAACTGAACAGGGAAACGGAGATGAGTTGAACAAAAACCGTACTGACTGATAAATTACTGATGCATCCAGATGTTTGTGCTAACCACTGCTATGGGATATCTTCATACCTGGGGCCTAGGGTATGAATTCTCAGCACAGGCTTGCTGACAGCCATTTCCCCTCCAGTGGTGGTTTATACAGAAGTGAgaagcagtggtgtgtgtgttccataTAGACACTTCAGGTGTATGTTTATGATTTTGGCCTACTGTCTACAAAAACAGGCACTGTTCCTATTTGCCAATCTGTAACGTTTATGTTCAACCTGCCTTCTCATACATACATGaatttatgtacagtatatggagTCCACAAATAATTGCACAATGATCATGAGTTTATTATATAGAAGGTCAGCTTTGATTTAAGATTATTTATACCTACATTAGATCAATCATAAAGCAATCACAGCCCTTTGCCTATGGCCCATAGACATCAGCtgtaaagctgaaattctacactTTAACATCAtgtaaagctgaaattctacactTTAACATCATAaccgttgtttcatttcatatccAATGTGCCGCAGTACAGAGCCAAAAGACTGTGTCAAGCATTTACAGACTGCACTCTATTAATGGACACGTGCCACTTTCATTAATCTGCCATATTAATTTTGAGTAtagaatttgttttatttgaataaaatgtttacttgTACATTATAGTAAGCATACTCTTTTTGGACagttttttacttcttttttttagttttttcagttttagcatttttacaaaacaaaaattaaaatatgtcaCTACTGCACAATAAgggattaaattaaataaataaaataataagcagttggtaaaagaaaaaaggatatACAGTTCTTGGCAACACTAGCTGTAGATATCTTTCCTACAGAGTTGGCAATAAATCCCTTTTTTTCAGTGCAGCtctacattcttttttttttatcaagtaaAAGGATATGAACAAGGAAAATTACCTCAGAGCAAATTagatcacttttttcttcaGAATTTTCTCCTGATGGTGGTCATAcatctctcccctatcatattAACTACCGACCTGGGAGGGTGATTTACAAACACGTGCCTTCCTACAAAAAGAGATTGGGTCAAAATGAGTTGCTCTGCTCCCACTTTCACTCTTTGTAGTTGTGAGTATGATTTTTATGGTCTCTAAGAGCCTTTTGAGGGAGCCTTCTGAGTAATCTGATTCCCAATCTTGGTCCCAAATGCTCTCTTACAGTGAAATCTGAGCAGTTCTAAGAATTTTTATGTTGTATTTGAGTTCTTAAATCGCTGTAGACTTCAGCAACAGGGAGGAGCCTTTTCTACTTTGAGGAACTGTGGTTAATATGTGAACATGAAAACCTCTGTAGATACAAACTCTTTAGACATATTCTTCTACTTTAAATCATGtgtcagaatttttttctgtgcgtgtgtgtttattcagtttaaattaatcaattaatgaTATTTGACAGGTTAGATTCTTGCCTTCTTGTTTTTGGTATAAATGCCTTTGTTGTGTAAATCTTTGTAAATTTTATAAATCTTCCCCATTGGACAACTTCCCCATCGTTTCCTACTACCAAAAGTAGTGCAACATGTTTGGGAAAGAGAAGGCTAATTGCTCAATCTgcataatttataaaaatgtctgtCATTGTCTCTGcaacaactacaaaaaaaaaactgcatcaaCATCACAAACTGTGTT
>XM_034312991.1
tgtgcaggacactcgagttcttctactccaaccttggcaaacttGTATgcatccaactttgtggcaacagattgGTAAAGGCCAACATAtgtgtgtgaaggtcaggtgtccacaaacttttgagCTTCGCAGAGAGCACAATGAATGAATTGCTGGGTTGGTACGGATATGATAAAGTTGACCTGCAAGACTCAGAGGCCGCTGACATCAGGAATCACAACGGCAGACTAAGACGCCACCAAGTATCTGTGCTTAAAGAGAATTCAGATCCAAAGCCTACTGTAATGGAGAGTAAGCTGACATCTGGCTCCTCTGCGTCGACTAAAAATGGAGTGAAAGATCCTACTGGCTTTCCCCTCTctccttcatcatcctcattcTCAACCCACATGAAGGACCTGCACAGCACCCATGTCGTGGTGCCTCTCATCAAACCATCTGCAGtTGATGAGCAGCAGAATGttcagattgtgtgtgtgtggtgtcagaAGGAGGGGCTTAAACGCTACTCTCTGGTCATGGGCTCTGAACTCAAGAGCTTCTGCAGCGAGAAGTGTTTTGCCATGTGCCGACGAGCCTACTTTAAACGCAACAAGgctcaAAATGAAAATCGGCCTGGTGAACagtcttctcctcctcctggtCAAACGGAGGAAACACCTCCTCAGCTCATGCTTAAGATGAACAGTAACACACGAGTATGTGATTGGTGCAAACACGTGCGTCACACCAAGTACCTGGACTTAGGTGCAGGTGACGACAGACTGCAGTTCTGCAGTACCAAGTGCCTTAACCagtataaaatggacattttctACCGAGAGGCCCGGGCTGCACTCACAACATCTGGCTCTAGTCCGAGCCAACCAGAAAACGAGAATCGTCCAGCCGGAGAGAGTGAGACTCTGCTGACACCAGAATCATGGAACAACCCTTCAATGGAGGGAGACAGCAAAGAAACAGTGTCACCCAAAGTTTCGACGCCTGTgtcatcttcctcttcatcgTCATCCTCAGTTAGAGCATCTGTCTTGGCTCTGCAGAAGGAAAGAGAGTGCCCTGCTTCTTCTCAGCTCCAGACTGGCACTCCAGTGCCGTCTACCCCTCCACCTCATGTTGTTGTAGAACAACCATGGGTGATACAGAAGCCCCCATCCTTTAACCGGGCACCTATCCATGCACAGCCCCGAAACCCAGGATCCAGCCCACACCAGAGACCctcacacacatctccacaggtacacacaccttCCGTTCGCCCACTTCCCCCACCACAGCTCTTACACCCATATGCAGCGTCAATGATGCCCTGTGCACCCACCTACCCTCATCCCATTCCATCACTCATGCCAACTCTGGGTCTGCCATGTCCACAACCTACTGTCCTGGTGCCATATCCGATTGTAGTTCCTCTCCCTGTTCCTGTGCCAATTCCCATACCAATACCAGTGAACTCAGGGGCTTTGGGACATGCTGGGGTTATTCGTAACcacaaggagaaagagaagacagGAAGAGTTGCAGCTTCAGTCACTCCTGAAGATGTAGATAGAGAGCGGATGTCTGAAGATCAGGAGATTACTGATGGCATCTTAGTTGAGCACAAAGTAAAGACTGAGCAGTCTTCATCTCCAGACCCGTATTCTCCTGCTTTCTCATCACATTCTTTCCCAATCTTATCTGCTCATCCACTGGTCAGTCCTACCCCTCCATTGCCAGAAGATCAGAGACAAGAAGTTAGGGAGCGACAGGTGATACAGAGAGCAATGTGCAGAGTGAAGCAGGAAGGTGAAACAGAGTTCGACCTCAATAAGCAGACGGAGGTTGAACAAGAGAATGGATGGGGCAGGAATGGGGATGAAGATGACTTGATTGCACAGCAAATGTCTGCTAAATCTTACACAGGCACTTTAAAGCACACATCCAGTTCAGCCCCTGAAAATGCATCTTCCACAGTGGACTCGCCAAATGCACGAGCTTCAATCATTCTACAGAAAGCACTCAGCACAACATCAGTAGTCACTCCCACAGCGTCTATCCTGTTGAACAACACAGTTGCCACTTCCAATTCAGTTCACTCCGTTTATTCCTCAACATGCATAGCTACAGTTCAGTCAGACCCAGAACAAAGAACAAGCTCTGGCCAAAATTCATCCCCACTTCCTGAATCTGAGGATGTGAAAGAGAACGTCTCAGGAGGGCGGGAGCCTGGTTTAAACTGTTCCCTTCCAGCAGAGCAAACAGACTGCCAAACAGACCAATCAGAAGAGAGCAGGGGGGGAGCTGTAGACAGTGATGCTCTTGCAGCTGACGAACATGCTTACGCATCGATCCATCCCGCCAAAATTACGAGAAAAGAATGCACACACGATCACTCtgacaactgcacacacactttctcacatgGTTACACACAGTTGGGACAAGAGCTCACACATGCATGTGCCCGCTTTCGAGCAAAGTGGTGTGCATACTGAAATAGAGCCGCCTTTGAAGAGGAGATGCCTGAGGATCAGAGACCAGAACAAATGAAGCACAGATCATTTGTGGAGTGAACTTCCTTTTTGTGTATCTGAAGTCAGACACAGAATGCAGGCCTTTCCCTTGGTGCTGGAACTGAACAGGGAAACGGAGATGAGTTGAACAAAAACCGTACTGACTGATAAATTACTGATGCATCCAGATGTTTGTGCTAACCACTGCTATGGGATATCTTCATACCTGGGGCCTAGGGTATGAATTCTCAGCACAGGCTTGCTGACAGCCATTTCCCCTCCAGTGGTGGTTTATACAGAAGTGAgaagcagtggtgtgtgtgttccataTAGACACTTCAGGTGTATGTTTATGATTTTGGCCTACTGTCTACAAAAACAGGCACTGTTCCTATTTGCCAATCTGTAACGTTTATGTTCAACCTGCCTTCTCATACATACATGaatttatgtacagtatatggagTCCACAAATAATTGCACAATGATCATGAGTTTATTATATAGAAGGTCAGCTTTGATTTAAGATTATTTATACCTACATTAGATCAATCATAAAGCAATCACAGCCCTTTGCCTATGGCCCATAGACATCAGCtgtaaagctgaaattctacactTTAACATCAtgtaaagctgaaattctacactTTAACATCATAaccgttgtttcatttcatatccAATGTGCCGCAGTACAGAGCCAAAAGACTGTGTCAAGCATTTACAGACTGCACTCTATTAATGGACACGTGCCACTTTCATTAATCTGCCATATTAATTTTGAGTAtagaatttgttttatttgaataaaatgtttacttgTACATTATAGTAAGCATACTCTTTTTGGACagttttttacttcttttttttagttttttcagttttagcatttttacaaaacaaaaattaaaatatgtcaCTACTGCACAATAAgggattaaattaaataaataaaataataagcagttggtaaaagaaaaaaggatatACAGTTCTTGGCAACACTAGCTGTAGATATCTTTCCTACAGAGTTGGCAATAAATCCCTTTTTTTCAGTGCAGCtctacattcttttttttttatcaagtaaAAGGATATGAACAAGGAAAATTACCTCAGAGCAAATTagatcacttttttcttcaGAATTTTCTCCTGATGGTGGTCATAcatctctcccctatcatattAACTACCGACCTGGGAGGGTGATTTACAAACACGTGCCTTCCTACAAAAAGAGATTGGGTCAAAATGAGTTGCTCTGCTCCCACTTTCACTCTTTGTAGTTGTGAGTATGATTTTTATGGTCTCTAAGAGCCTTTTGAGGGAGCCTTCTGAGTAATCTGATTCCCAATCTTGGTCCCAAATGCTCTCTTACAGTGAAATCTGAGCAGTTCTAAGAATTTTTATGTTGTATTTGAGTTCTTAAATCGCTGTAGACTTCAGCAACAGGGAGGAGCCTTTTCTACTTTGAGGAACTGTGGTTAATATGTGAACATGAAAACCTCTGTAGATACAAACTCTTTAGACATATTCTTCTACTTTAAATCATGtgtcagaatttttttctgtgcgtgtgtgtttattcagtttaaattaatcaattaatgaTATTTGACAGGTTAGATTCTTGCCTTCTTGTTTTTGGTATAAATGCCTTTGTTGTGTAAATCTTTGTAAATTTTATAAATCTTCCCCATTGGACAACTTCCCCATCGTTTCCTACTACCAAAAGTAGTGCAACATGTTTGGGAAAGAGAAGGCTAATTGCTCAATCTgcataatttataaaaatgtctgtCATTGTCTCTGcaacaactacaaaaaaaaaactgcatcaaCATCACAAACTGTGTT

Function

NR:

description
PREDICTED: sine oculis-binding protein homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU332738 False 320 lncRNA 0.32 1 11079168 11079487
XM_026922693.2 True 4419 mRNA 0.44 7 11079173 11093818
XM_034312991.1 False 4361 mRNA 0.44 7 11079173 11094176

Neighbor

gene id symbol gene type direction distance location
mapre3b mapre3,mapre3b,LOC108425644,LOC107594695 coding downstream 2406 11067737 ~ 11076762 (-)
tmem214 tmem214,LOC104961504,LOC106608390 coding downstream 13221 11053196 ~ 11065947 (-)
agbl5 agbl5 coding downstream 28562 11035084 ~ 11050606 (-)
LOC113531821 gen1 coding downstream 50763 11012219 ~ 11028405 (-)
msgn1 msgn1 coding downstream 69536 11008342 ~ 11009632 (-)
rsph9 rsph9 coding upstream 234852 11329028 ~ 11344755 (-)
tmem63a tmem63b coding upstream 261884 11356060 ~ 11380183 (-)
faxca LOC108279701,LOC107726027,LOC107710104,LOC107656374,LOC107579532,LOC106571486,LOC106607948 coding upstream 331882 11426058 ~ 11441607 (-)
ccnc ccnc,LOC107579661 coding upstream 349934 11444110 ~ 11454450 (-)
pgm3 pgm3,LOC107579473,LOC107656266 coding upstream 367711 11461887 ~ 11469636 (-)
G280652 NA non-coding downstream 148188 10930738 ~ 10930980 (-)
G280640 NA non-coding downstream 170538 10906173 ~ 10908630 (-)
G280615 NA non-coding downstream 294875 10783361 ~ 10784293 (-)
G280527 NA non-coding downstream 301271 10776763 ~ 10777897 (-)
G280360 NA non-coding downstream 608793 10468686 ~ 10470375 (-)
G280812 NA non-coding upstream 75710 11169886 ~ 11172446 (-)
G280817 NA non-coding upstream 85755 11179931 ~ 11182051 (-)
G280818 NA non-coding upstream 88890 11183066 ~ 11184143 (-)
G280841 NA non-coding upstream 165615 11259791 ~ 11259991 (-)
G281021 NA non-coding upstream 265186 11359362 ~ 11359636 (-)
si:ch211-51e12.7 LOC108280090 other downstream 72025 10995105 ~ 11007143 (-)
LOC113532274 NA other downstream 782970 10255972 ~ 10296198 (-)
cracr2ab LOC108280118 other downstream 1186782 9878481 ~ 9892386 (-)
G279415 NA other downstream 1870605 9207351 ~ 9208563 (-)
G278912 NA other downstream 2859488 8218561 ~ 8219680 (-)
vegfab vegfa,LOC108435123 other upstream 144759 11238935 ~ 11259412 (-)
G281074 rad51ap1 other upstream 492128 11586304 ~ 11588024 (-)
G281092 mansc1 other upstream 563714 11657890 ~ 11660327 (-)
dusp16 dusp16 other upstream 626887 11721063 ~ 11752913 (-)
LOC113531972 muc19,LOC108280038 other upstream 4045749 15139925 ~ 15184075 (-)

Expression


Co-expression Network