G280818


Basic Information

Item Value
gene id G280818
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11183066 ~ 11184143 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU332800
TGTGAGTTTATTTTCAAGGTTCGTGAACAAATAACAATGATCTCTGACTCCATTACTCATCATCTGAGTCAAAGCACAAGAATACAAGTATCAGCTCGTTcaaaaaaagcacttttatGTTGTACATAAAGTGAAAGTTTCACAGCATAAATTATAGGCTTCTTTCAAAGGTACACTAAACCCTTAATATGCTGCGACCATGGGCATGTTCCTACCAAAATGTTAAAGTcaacattatatacacataaattaCAACTGCTCAAGGCCCTTATGCCAAACTGCTTTGATCTGTTTGTTCAGTGATCATATGAGCCAAAGCCTACAGTAACAACAGTTTATTCACATCATTTCAAAAAGAATGATTTATTCATGCACTCTAGgactattaataaaaatatcctTGAGTATAATCACTTGCAAAGACATGCCATTATACAGTACCACCAGTAATATGTTTGACAAAAAAAGtaatcttttcttttcattctgacATGccacaaaaaaagcatttttgttGACCTGCCTGAACGGATTTACaaaatctaatatttttatGGATTTTCAATGTCTGAGTCTCGTCATTTCTCATAACTAATCAGAGCAGGGTGTAATTTACAGGAGAAATGCACTGCTAGGTCCTGAGTCTGAGGTCATACATCTCAAGGCTCCAAGACCTCATCTGgcttagaagaaaaaaaaaaacatttttcactggGTAAGTgtatacagacacagacacacactccactgcaaATATTAACTGCATGTCTTGCACTGTATGAGATAATGGGTTATTTAGATAGCCTGACCTACAAATTCAAGGGCATATGCATACACATATgcctacacaaacacatttagtGCAAGAGGTGCAGTGTGACTGGAGTAGCAACTGTGGCTCTGCAGCTGTGCAGGCCTACGTGAGCCTTGGCATGAacacactcctccttcactcctgcggtctctctcttctctatcCCTCCTCTATTAACTCTGTCCATTTCCCACTCTCACTTTGGCTCTGTCTGAATCCTCTCCCTACAGctttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU332800 True 1049 lncRNA 0.38 2 11183066 11184143

Neighbor

gene id symbol gene type direction distance location
mapre3b mapre3,mapre3b,LOC108425644,LOC107594695 coding downstream 106304 11067737 ~ 11076762 (-)
tmem214 tmem214,LOC104961504,LOC106608390 coding downstream 117119 11053196 ~ 11065947 (-)
agbl5 agbl5 coding downstream 132460 11035084 ~ 11050606 (-)
LOC113531821 gen1 coding downstream 154661 11012219 ~ 11028405 (-)
msgn1 msgn1 coding downstream 173434 11008342 ~ 11009632 (-)
rsph9 rsph9 coding upstream 144885 11329028 ~ 11344755 (-)
tmem63a tmem63b coding upstream 171917 11356060 ~ 11380183 (-)
faxca LOC108279701,LOC107726027,LOC107710104,LOC107656374,LOC107579532,LOC106571486,LOC106607948 coding upstream 241915 11426058 ~ 11441607 (-)
ccnc ccnc,LOC107579661 coding upstream 259967 11444110 ~ 11454450 (-)
pgm3 pgm3,LOC107579473,LOC107656266 coding upstream 277744 11461887 ~ 11469636 (-)
G280817 NA non-coding downstream 1015 11179931 ~ 11182051 (-)
G280812 NA non-coding downstream 10620 11169886 ~ 11172446 (-)
G280652 NA non-coding downstream 252086 10930738 ~ 10930980 (-)
G280640 NA non-coding downstream 274436 10906173 ~ 10908630 (-)
G280615 NA non-coding downstream 398773 10783361 ~ 10784293 (-)
G280841 NA non-coding upstream 75648 11259791 ~ 11259991 (-)
G281021 NA non-coding upstream 175219 11359362 ~ 11359636 (-)
G281057 NA non-coding upstream 377582 11561725 ~ 11562064 (-)
G281070 NA non-coding upstream 399250 11583393 ~ 11583637 (-)
G281075 NA non-coding upstream 404860 11589003 ~ 11589687 (-)
sobpb LOC108279441 other downstream 88890 11079168 ~ 11094176 (-)
si:ch211-51e12.7 LOC108280090 other downstream 175923 10995105 ~ 11007143 (-)
LOC113532274 NA other downstream 886868 10255972 ~ 10296198 (-)
cracr2ab LOC108280118 other downstream 1290680 9878481 ~ 9892386 (-)
G279415 NA other downstream 1974503 9207351 ~ 9208563 (-)
vegfab vegfa,LOC108435123 other upstream 54792 11238935 ~ 11259412 (-)
G281074 rad51ap1 other upstream 402161 11586304 ~ 11588024 (-)
G281092 mansc1 other upstream 473747 11657890 ~ 11660327 (-)
dusp16 dusp16 other upstream 536920 11721063 ~ 11752913 (-)
LOC113531972 muc19,LOC108280038 other upstream 3955782 15139925 ~ 15184075 (-)

Expression


Co-expression Network