G281057


Basic Information

Item Value
gene id G281057
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11561725 ~ 11562064 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU333091
GAAGGCCACAGCATATTACTTACATCATTTTTGTACTCATCAAACCATACAGTGAGCCTGCGTTTCCTGTGgatggggcggagtcatccttaAAGAGgccacgcccatcaggatagaaatgtttcttcaTACATGTAGGATAAAAGTGAttagtcagaataactttgtaccgatttgctctcttgactcccCTTTCTGTAAGTTTTAACATCCCTTTCAATTTTGTTCTGTACTTTTGCCGCCCTCTTCAAAATGTGCTTCGTGGTACATTAAGGTGCCACACTGACACAATTACAGCAATTTCAACATAACTGCATATTAGCAAATCATTTCTGAGGCA

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00030 Pentose phosphate pathway
ko00051 Fructose and mannose metabolism
ko00710 Carbon fixation in photosynthetic organisms

RNA

RNA id representative length rna type GC content exon number start site end site
TU333091 True 340 lncRNA 0.41 1 11561725 11562064

Neighbor

gene id symbol gene type direction distance location
foxm1 foxm1 coding downstream 69456 11487504 ~ 11492269 (-)
pgm3 pgm3,LOC107579473,LOC107656266 coding downstream 92089 11461887 ~ 11469636 (-)
ccnc ccnc,LOC107579661 coding downstream 107275 11444110 ~ 11454450 (-)
faxca LOC108279701,LOC107726027,LOC107710104,LOC107656374,LOC107579532,LOC106571486,LOC106607948 coding downstream 120118 11426058 ~ 11441607 (-)
tmem63a tmem63b coding downstream 181542 11356060 ~ 11380183 (-)
ada2b LOC108279883 coding upstream 27749 11589813 ~ 11596577 (-)
atp6v1e1b atp6v1e1,atp6v1e1b,LOC108442797,LOC103026244,LOC107583987,LOC107658907,LOC100708725,LOC102784574 coding upstream 34704 11596768 ~ 11601405 (-)
snap91b LOC108279885,LOC108443062 coding upstream 48069 11610133 ~ 11639731 (-)
LOC117599572 LOC108279885 coding upstream 56000 11618064 ~ 11621188 (-)
gpr19 gpr19,LOC107707975,LOC107710070,LOC107658992,LOC107662212 coding upstream 198717 11760781 ~ 11768919 (-)
G281021 NA non-coding downstream 202089 11359362 ~ 11359636 (-)
G280841 NA non-coding downstream 301734 11259791 ~ 11259991 (-)
G280818 NA non-coding downstream 377582 11183066 ~ 11184143 (-)
G280817 NA non-coding downstream 379674 11179931 ~ 11182051 (-)
G280812 NA non-coding downstream 389279 11169886 ~ 11172446 (-)
G281070 NA non-coding upstream 21329 11583393 ~ 11583637 (-)
G281075 NA non-coding upstream 26939 11589003 ~ 11589687 (-)
G281102 lrp6,LOC102306404,LOC101476287 non-coding upstream 145626 11707690 ~ 11710984 (-)
G281362 NA non-coding upstream 471032 12033096 ~ 12036362 (-)
G281373 NA non-coding upstream 531793 12093857 ~ 12094059 (-)
vegfab vegfa,LOC108435123 other downstream 302313 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 467549 11079168 ~ 11094176 (-)
si:ch211-51e12.7 LOC108280090 other downstream 554582 10995105 ~ 11007143 (-)
LOC113532274 NA other downstream 1265527 10255972 ~ 10296198 (-)
cracr2ab LOC108280118 other downstream 1669339 9878481 ~ 9892386 (-)
G281074 rad51ap1 other upstream 24240 11586304 ~ 11588024 (-)
G281092 mansc1 other upstream 95826 11657890 ~ 11660327 (-)
dusp16 dusp16 other upstream 158999 11721063 ~ 11752913 (-)
LOC113531972 muc19,LOC108280038 other upstream 3577861 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 4838857 16400921 ~ 16406863 (-)

Expression


Co-expression Network