G281070


Basic Information

Item Value
gene id G281070
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11583393 ~ 11583637 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU333104
cacacccatatgtggttcttccccaaactgctgccacaaagttggaagcacacacttgtctagaatgtctttgtatgctgtagcattacaatttcccttcactggaactaagaggcccaaaccttttccatcatgacgatgcccctgtgcacaaagcgagctccatgaagacatggtgtgttaaggttggagtggaagaactcgagtgtcctgcacagagccctgacctcaaccccactgaacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU333104 True 245 lncRNA 0.49 1 11583393 11583637

Neighbor

gene id symbol gene type direction distance location
foxm1 foxm1 coding downstream 91124 11487504 ~ 11492269 (-)
pgm3 pgm3,LOC107579473,LOC107656266 coding downstream 113757 11461887 ~ 11469636 (-)
ccnc ccnc,LOC107579661 coding downstream 128943 11444110 ~ 11454450 (-)
faxca LOC108279701,LOC107726027,LOC107710104,LOC107656374,LOC107579532,LOC106571486,LOC106607948 coding downstream 141786 11426058 ~ 11441607 (-)
tmem63a tmem63b coding downstream 203210 11356060 ~ 11380183 (-)
ada2b LOC108279883 coding upstream 6176 11589813 ~ 11596577 (-)
atp6v1e1b atp6v1e1,atp6v1e1b,LOC108442797,LOC103026244,LOC107583987,LOC107658907,LOC100708725,LOC102784574 coding upstream 13131 11596768 ~ 11601405 (-)
snap91b LOC108279885,LOC108443062 coding upstream 26496 11610133 ~ 11639731 (-)
LOC117599572 LOC108279885 coding upstream 34427 11618064 ~ 11621188 (-)
gpr19 gpr19,LOC107707975,LOC107710070,LOC107658992,LOC107662212 coding upstream 177144 11760781 ~ 11768919 (-)
G281057 NA non-coding downstream 21329 11561725 ~ 11562064 (-)
G281021 NA non-coding downstream 223757 11359362 ~ 11359636 (-)
G280841 NA non-coding downstream 323402 11259791 ~ 11259991 (-)
G280818 NA non-coding downstream 399250 11183066 ~ 11184143 (-)
G280817 NA non-coding downstream 401342 11179931 ~ 11182051 (-)
G281075 NA non-coding upstream 5366 11589003 ~ 11589687 (-)
G281102 lrp6,LOC102306404,LOC101476287 non-coding upstream 124053 11707690 ~ 11710984 (-)
G281362 NA non-coding upstream 449459 12033096 ~ 12036362 (-)
G281373 NA non-coding upstream 510220 12093857 ~ 12094059 (-)
G281455 NA non-coding upstream 667677 12251314 ~ 12254155 (-)
vegfab vegfa,LOC108435123 other downstream 323981 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 489217 11079168 ~ 11094176 (-)
si:ch211-51e12.7 LOC108280090 other downstream 576250 10995105 ~ 11007143 (-)
LOC113532274 NA other downstream 1287195 10255972 ~ 10296198 (-)
cracr2ab LOC108280118 other downstream 1691007 9878481 ~ 9892386 (-)
G281074 rad51ap1 other upstream 2667 11586304 ~ 11588024 (-)
G281092 mansc1 other upstream 74253 11657890 ~ 11660327 (-)
dusp16 dusp16 other upstream 137426 11721063 ~ 11752913 (-)
LOC113531972 muc19,LOC108280038 other upstream 3556288 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 4817284 16400921 ~ 16406863 (-)

Expression


Co-expression Network