G281373


Basic Information

Item Value
gene id G281373
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12093857 ~ 12094059 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU333459
cctgaccagctgatgcaaccccagatcataacactgcctccagaggcttgtacagtaggcactatgcatgacgggtgaatcacttcatgcatttcccttcttaccctgacacgcccattgctttggaatagagtaaatctgattttatcagaccagatgacctttttccattgctccactgtccagtctttatgctccagagc

Function

GO: NA

KEGG:

id description
ko04668 TNF signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU333459 True 203 lncRNA 0.47 1 12093857 12094059

Neighbor

gene id symbol gene type direction distance location
LOC113532343 NA coding downstream 758 12083126 ~ 12093099 (-)
syn3 syn3,LOC108279673,LOC108412895 coding downstream 12086 11989144 ~ 12081771 (-)
ptpro ptpro coding downstream 168350 11865792 ~ 11925507 (-)
tbk1 tbk1 coding downstream 297932 11773891 ~ 11795925 (-)
gpr19 gpr19,LOC107707975,LOC107710070,LOC107658992,LOC107662212 coding downstream 324938 11760781 ~ 11768919 (-)
LOC113532368 NA coding upstream 3462 12097521 ~ 12108662 (-)
LOC113532307 LOC108279675 coding upstream 16184 12110243 ~ 12122771 (-)
zgc:165507 slc16a7,LOC106609446,LOC103152572 coding upstream 160196 12254255 ~ 12272627 (-)
LOC113532409 NA coding upstream 269749 12363808 ~ 12367546 (-)
mapk12b mapk12b,LOC108279513,LOC108442322,LOC103035956,LOC107579544,LOC107656379,LOC103459704,LOC107710136,LOC103151778 coding upstream 275550 12369609 ~ 12374384 (-)
G281362 NA non-coding downstream 57495 12033096 ~ 12036362 (-)
G281102 lrp6,LOC102306404,LOC101476287 non-coding downstream 382873 11707690 ~ 11710984 (-)
G281075 NA non-coding downstream 504170 11589003 ~ 11589687 (-)
G281070 NA non-coding downstream 510220 11583393 ~ 11583637 (-)
G281057 NA non-coding downstream 531793 11561725 ~ 11562064 (-)
G281455 NA non-coding upstream 157255 12251314 ~ 12254155 (-)
G281486 NA non-coding upstream 274900 12368959 ~ 12369265 (-)
G281510 LOC108279795,LOC108442313 non-coding upstream 363504 12457563 ~ 12459092 (-)
G281527 NA non-coding upstream 382205 12476264 ~ 12477629 (-)
LOC113532391 NA non-coding upstream 1052223 13146282 ~ 13147358 (-)
dusp16 dusp16 other downstream 340944 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 433530 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 505833 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 834445 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 999681 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 3045866 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 4306862 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 4744476 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 4864453 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 5884704 17978763 ~ 17988280 (-)

Expression


Co-expression Network