G281486


Basic Information

Item Value
gene id G281486
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12368959 ~ 12369265 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU333597
ATAAAAACCTTAAACCTTATATATAACctgctcatgatagcctcagattcctgttcttggctgacaggagtggtcAAGGTTtggtgttttgtgcatgctgagatgcctttctgctcaccacagttgtaaagagtgattatatgagttactatatccttcctggcagctcgaaccaatctggccattttcctctgacctctcttatcaacaaggcatttccacccacagaactgtcgctcactcaatgttttttgttatcgcaccattctgtgtaatctctagagactgttgtgtgtgaaaatcccag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU333597 True 307 lncRNA 0.42 1 12368959 12369265

Neighbor

gene id symbol gene type direction distance location
LOC113532409 NA coding downstream 1413 12363808 ~ 12367546 (-)
zgc:165507 slc16a7,LOC106609446,LOC103152572 coding downstream 96332 12254255 ~ 12272627 (-)
LOC113532307 LOC108279675 coding downstream 246188 12110243 ~ 12122771 (-)
LOC113532368 NA coding downstream 260297 12097521 ~ 12108662 (-)
LOC113532343 NA coding downstream 275860 12083126 ~ 12093099 (-)
mapk12b mapk12b,LOC108279513,LOC108442322,LOC103035956,LOC107579544,LOC107656379,LOC103459704,LOC107710136,LOC103151778 coding upstream 344 12369609 ~ 12374384 (-)
mapk11 mapk11,LOC108279456,LOC103035641,LOC108442323,LOC107725929,LOC107656380,LOC107583972,LOC107579565,LOC105020226,LOC107658913 coding upstream 6526 12375791 ~ 12394521 (-)
LOC113531803 NA coding upstream 32914 12402179 ~ 12409530 (-)
LOC113532240 NA coding upstream 42594 12411859 ~ 12415074 (-)
apex1 apex1,LOC107658891 coding upstream 61183 12430448 ~ 12435191 (-)
G281455 NA non-coding downstream 114804 12251314 ~ 12254155 (-)
G281373 NA non-coding downstream 274900 12093857 ~ 12094059 (-)
G281362 NA non-coding downstream 332597 12033096 ~ 12036362 (-)
G281102 lrp6,LOC102306404,LOC101476287 non-coding downstream 657975 11707690 ~ 11710984 (-)
G281075 NA non-coding downstream 779272 11589003 ~ 11589687 (-)
G281510 LOC108279795,LOC108442313 non-coding upstream 88298 12457563 ~ 12459092 (-)
G281527 NA non-coding upstream 106999 12476264 ~ 12477629 (-)
LOC113532391 NA non-coding upstream 777017 13146282 ~ 13147358 (-)
G281964 NA non-coding upstream 799410 13168675 ~ 13210493 (-)
G281981 NA non-coding upstream 889887 13259152 ~ 13285718 (-)
dusp16 dusp16 other downstream 616046 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 708632 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 780935 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 1109547 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 1274783 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 2770660 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 4031656 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 4469270 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 4589247 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 5609498 17978763 ~ 17988280 (-)

Expression


Co-expression Network