G282006


Basic Information

Item Value
gene id G282006
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 13320173 ~ 13373048 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU334236
tctctctctctcacacacacacacacccctcacatacTATAATTGTGACATCACAGTCATGTCATCTGTCCCTTTGGAGGGTAAATCAGGGAACAGTCAAcattcagtttgtttgttttttttttctactttggTTTGTGGGCAAATAAATTCAACCACACCGagaaacaaaatgttaaaactcTCCCTCTCATCCAAGCTGCACTAATGCTTCTGGCTAGGActgatatctctctctctctctctctctctctctctcacacactcacacacacacacacacacacacacacacacacacacacacacacgctgcaagAGTGCCTACTGCCAATAGTCTGTGTAAGGCATGAATGTGAGTCACGCTCATGCAGTgtcacagatatacacacagacaggctTTAGCCCACATTGGCATGAATGTACAACGTCTCTGGCTGACTGGCTGCTAAGTGGAGGTCAGAGGTCGCTGGCTTTGCCTTTGTCCTGAGAGTTTCTCTGGGTGTAGAACAGAATGTAGGCCTGAGCCTTGCACACCTCctccactgcacacacacttagcttGGAGTCGTTACAGTGCACCCAAAA
>TU334237
aaatagtCTCATTTTATTGAGGTAAATTTCTCTATAAATTGAGGTAACAATTTGCATAGTTTTACATCTATACCTGCTGAAGAGCGGAGCAACTCAAACTGGAACCAACCGGAAAGAGGCAGACTCAAAAGAGTGTGTGAACTCATGACAAGATTACCTCAgttctctcacaaacacacacctacacagagAATGTGCTAACCACAATACAGTCACAGAATGAGTCCAATCAgctactaacacacactctcacacactctcacacactctcacacactctcacacactctcacacactctcacacactctcacacactctcacacactctcacacacaggtgGATACTGTACATACAGCATATGTTTTGTGTTCGCTGGTGAGAACCTTTTGTTTCTCTaaattactttcttttttacaaaaataaaaaagaaatcttgTTTAACCAAATACTCCGCATATAAAAGTACATTCTGGAAAGTctaaacagacagaaaacaaaatCCTGAATTGTCAAATCACATTCCTAAAGGAGCTGGTAACACTACAAGAGCCTTAAACTGTTCAAAAAATGGCAGGGCACTTTAAGTGACATAAAGGAACCtggtcagtctctctctctcacacacacacacacacacacacacctcacatacTATAATTGTGACATCACAGTCATGTCATCTGTCCCTTTGGAGGGTAAATCAGGGAACAGTCAAcattcagtttgtttgttttttttttctactttggTTTGTGGGCAAATAAATTCAACCACACCGagaaacaaaatgttaaaactcTCCCTCTCATCCAAGCTGCACTAATGCTTCTGGCTAGGActgatatctctctctctctctctctctctctctctcacacacacacacacacacacacacacacacgctgcaagAGTGCCTACTGCCAATAGTCTGTGTAAGGCATGAATGTGAGTCACGCTCATGCAGTgtcacagatatacacacagacaggctTTAGCCCACATTGGCATGAATGTACAACGTCTCTGGCTGACTGGCTGCTAAGTGGAGGTCAGAGGTCGCTGGCTTTGCCTTTGTCCTGAGAGTTTCTCTGGGTGTAGAACAGAATGTAGGCCTGAGCCTTGCACACCTCctccactgcacacacacttagcttGGAGTCGTTACAGTGCACCCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU334236 False 588 lncRNA 0.47 2 13320173 13373048
TU334237 True 1184 lncRNA 0.42 3 13320173 13321414

Neighbor

gene id symbol gene type direction distance location
depdc4 depdc4,LOC108427048 coding downstream 9910 13304454 ~ 13310263 (-)
scyl2 scyl2,si:ch211-244b2.1,LOC107755162 coding downstream 15894 13276926 ~ 13304279 (-)
tnni1d LOC108280151,LOC108427054,LOC107597014 coding downstream 121248 13188862 ~ 13198925 (-)
LOC113531778 trhde,si:ch211-149p5.1,si:ch211-198g19.1,LOC107590972,LOC107710683 coding downstream 209959 12962716 ~ 13110214 (-)
prl2 LOC108279639 coding downstream 500467 12809321 ~ 12819706 (-)
lamb1b LOC108279853 coding upstream 93154 13466202 ~ 13501821 (-)
acot18 LOC108279984,LOC108261735 coding upstream 136184 13509232 ~ 13522323 (-)
LOC113532074 NA coding upstream 159871 13532919 ~ 13549503 (-)
prkcq prkcq,LOC107748461,LOC107555829,LOC107675981 coding upstream 248249 13621297 ~ 13648197 (-)
sfmbt2 sfmbt2 coding upstream 292275 13665323 ~ 13724630 (-)
G281981 NA non-coding downstream 34455 13259152 ~ 13285718 (-)
G281964 NA non-coding downstream 109680 13168675 ~ 13210493 (-)
LOC113532391 NA non-coding downstream 172815 13146282 ~ 13147358 (-)
G281527 NA non-coding downstream 842544 12476264 ~ 12477629 (-)
G281510 LOC108279795,LOC108442313 non-coding downstream 861081 12457563 ~ 12459092 (-)
G282047 NA non-coding upstream 34565 13407613 ~ 13409326 (-)
G282060 NA non-coding upstream 54609 13427657 ~ 13427872 (-)
G282116 rbm17,LOC107755150,LOC107748463 non-coding upstream 186211 13559259 ~ 13563946 (-)
LOC117599591 NA non-coding upstream 198752 13571800 ~ 13575375 (-)
G282279 itih2,LOC107555817 non-coding upstream 460200 13833248 ~ 13837431 (-)
dusp16 dusp16 other downstream 1567260 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 1659846 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 1732149 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 2060761 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 2225997 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 1766877 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 3027873 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 3465487 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 3585464 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 4605715 17978763 ~ 17988280 (-)

Expression


Co-expression Network