G282047


Basic Information

Item Value
gene id G282047
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 13407613 ~ 13409326 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU334285
ttaaaatgatttattaccTCTGGTAATTAACATTTATAGCTGACATACTGAGCACAATAGTTCCCTGGAGTGTTTTCAAATGGTTGCTTGAGTGTTACAACATAATCAAAAGTCAGTTGtgaggaaaacagaaaaagcaaCCCTGACCTGTTAGCTTAGGGATGAGTGACTACACAGCAGGTTTAATCAGAAAACttcagtgtgcagtgtgctTGTGCATTTTGTCCtgtcaaataaaaacatcaatcCACTGTAATGTCACAACACCAGAATGAACATCATAAGATGTCAGATTGCAAAAGTCATCCTGATTTTGTTCACATGACACTTTTCCAACTAACCTGGGTAATAGTGTAGAACAGTGAGAGTTAAATCACTAACATGATTTCACTGTAATGACAAAATGGCACAAGGTGCACAGTGTTTTCTCTGAGTGTGCTGCTGACATCTCAGAAGGCTATGCTCGGTATCACGCAGTGACATTACACAGTTCTTAGCTCGCTAAAAACCTGACATGTTAAATTACAAAATCATTAAATTCATTTGAGGAGATTAACAATCTTGAATTGTTATAAATAGACCTGCATTAAACCTGCATTATAttaccatatacagtatatttacacaTACATCCAGTTATTCCCAgtatcatattttaatttttttttttttactgtcagtCCTATACAAAGCAAAGATAAAAAGTTGTTTAAAAAGgctaaacataaaataaaaatgtggctTCTTTCTGTTTAAggcttctaaaaataataataataattaaaaaaaaaaaaaaacactactggCTTTTACAGTGGTATCCTACATCTCCCATGATGCACcattgcacacacaaacatttttactcTTCGACACAGAACTAAAGGCACTGAATAGTCACACTTGCTTGTGCACGTCCACATTTGACCCATGATCAAacgtgacctttttttttttatctttctgacacacacttcacacttacaGCCTTCCTCACATTCCCAGAACGTCACACTGGATGTTCATGACATGTCCAATGTCTGGACAGTGTGCAGAGCTTTGTTTAAAGTCACAGGATCTGGCTAATTTCTGGTATCTTTAATGTAAAATCTCATTTAATCCTTTGACCTACATATCCATTTGACTCATTtggtgtgcgcacacacacacacacacacatccagtaGGATTTCAATGTGAGGCAGAATCCAACTCATGCTGAGTAACACAAGGTTAATGGTCTTGGCTTTCTGACAGTCCTGGTATTTCCAGTCACTTGTGCACAACCTCAGTGATCTCAAACACTTGTTTGATTTTGCTGTTGAGAAAGGAATCAAAGGAGGACAGCTGGAAGATACGATCCTTTGCTAGGTTGCTTATTCCgcatccttttttccccacacttgttttaacactttaattCTGAGTCTTCTGAGCTCAGGCTCTGTTCCTCACTTTACTGCTGCaggccagaaaaaaaagagttctaATAAACTATTTGGATCCACATTAGTCAAAGAATCATGGCCTCCTGAAACGCCTCAATCcacctgaaatgaaaaaaaaaacagagatataagttaaaagttaataaaagacCAGATGTTTGTGTGCTTGCATTTTTGtgattatgaaaaaataaagctgtgtaTCATTACTGAGATTCTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU334285 True 1670 lncRNA 0.37 2 13407613 13409326

Neighbor

gene id symbol gene type direction distance location
vezt vezt coding downstream 33328 13344744 ~ 13374285 (-)
metap2a metap2,metap2a,LOC107689230,LOC107755160,LOC107597011 coding downstream 69240 13325401 ~ 13338373 (-)
depdc4 depdc4,LOC108427048 coding downstream 97350 13304454 ~ 13310263 (-)
scyl2 scyl2,si:ch211-244b2.1,LOC107755162 coding downstream 103334 13276926 ~ 13304279 (-)
tnni1d LOC108280151,LOC108427054,LOC107597014 coding downstream 208688 13188862 ~ 13198925 (-)
lamb1b LOC108279853 coding upstream 56876 13466202 ~ 13501821 (-)
acot18 LOC108279984,LOC108261735 coding upstream 99906 13509232 ~ 13522323 (-)
LOC113532074 NA coding upstream 123593 13532919 ~ 13549503 (-)
prkcq prkcq,LOC107748461,LOC107555829,LOC107675981 coding upstream 211971 13621297 ~ 13648197 (-)
sfmbt2 sfmbt2 coding upstream 255997 13665323 ~ 13724630 (-)
G282006 NA non-coding downstream 34565 13320173 ~ 13373048 (-)
G281981 NA non-coding downstream 121895 13259152 ~ 13285718 (-)
G281964 NA non-coding downstream 197120 13168675 ~ 13210493 (-)
LOC113532391 NA non-coding downstream 260255 13146282 ~ 13147358 (-)
G281527 NA non-coding downstream 929984 12476264 ~ 12477629 (-)
G282060 NA non-coding upstream 18331 13427657 ~ 13427872 (-)
G282116 rbm17,LOC107755150,LOC107748463 non-coding upstream 149933 13559259 ~ 13563946 (-)
LOC117599591 NA non-coding upstream 162474 13571800 ~ 13575375 (-)
G282279 itih2,LOC107555817 non-coding upstream 423922 13833248 ~ 13837431 (-)
G282283 itih2,LOC106576198 non-coding upstream 429332 13838658 ~ 13840594 (-)
dusp16 dusp16 other downstream 1654700 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 1747286 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 1819589 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 2148201 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 2313437 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 1730599 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 2991595 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 3429209 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 3549186 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 4569437 17978763 ~ 17988280 (-)

Expression


Co-expression Network