G282116 (rbm17,LOC107755150,LOC107748463)


Basic Information

Item Value
gene id G282116
gene name rbm17,LOC107755150,LOC107748463
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 13559259 ~ 13563946 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU334376
TTCCAAAATACGCTGTTTATTTCCTGGTTTCTACAACACAGTATGCTTCTTATTCAGAGTCAAGAATGAGATGCTCATGCTAATACACACTGAACTGAGAACACAGAGAATCCTTGTGTAAATTAAAtcgcaaattaaaaaaaagaaaagaaaagaaatctatTTCAGGTTGCAGGTTAAATATTCCAATGTTCATTATAAACAAATAtgagaatgaaaaatgaaaaaacatccactgtATGTACAAAAAGAGGGccacagacatttttttcccctggaattttcacacagagaaagggagggatGTTATCCTGCTTGTGTGGCTCACACCGGTTCTCCCAGGTCTAGCACACGGAATTTGTCCAGGTTATAGAAGCAGGCTTTCACCACTCGACCTCCAAAATACCTTCCGTTCAGATCCACCAcggCTTTAATGGCTGACTCAACCCGTTCAAATTCCAGGAATATTCTCACCGCTTCATCATCTGCCACATCTGAGATCTCAAAGATAACACACTTGATGACTTTGCCATATTTCTCAcattcctcttttgtttcagcTTCTAGGTCTTCATCCACCTCTCCTCTTCCCACCATGTTCCGCAATAACACCACCTTCGTAGGGCACTTGAGGATCTCAGTCAGAGGGTTGACCTCATTCTTCTTCGTATCTGCTGCTCCTGGATTATAGCCAGGCGTGTCAGCCGCATTCTGACTGGATCCTCCAGTCTTTTCTGTCGAGTCTCCAACGATGATCTTCCC

Function

symbol description
rbm17 Predicted to enable RNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within regulation of RNA splicing. Predicted to be located in nucleoplasm. Predicted to be part of spliceosomal complex. Orthologous to human RBM17 (RNA binding motif protein 17).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU334376 True 762 lncRNA 0.42 6 13559259 13563946

Neighbor

gene id symbol gene type direction distance location
LOC113532074 NA coding downstream 9756 13532919 ~ 13549503 (-)
acot18 LOC108279984,LOC108261735 coding downstream 36936 13509232 ~ 13522323 (-)
lamb1b LOC108279853 coding downstream 57438 13466202 ~ 13501821 (-)
vezt vezt coding downstream 184974 13344744 ~ 13374285 (-)
metap2a metap2,metap2a,LOC107689230,LOC107755160,LOC107597011 coding downstream 220886 13325401 ~ 13338373 (-)
prkcq prkcq,LOC107748461,LOC107555829,LOC107675981 coding upstream 57351 13621297 ~ 13648197 (-)
sfmbt2 sfmbt2 coding upstream 101377 13665323 ~ 13724630 (-)
LOC117599536 itih5 coding upstream 187577 13751523 ~ 13763790 (-)
LOC113532385 kcna1a,kcna1l,LOC108279524,LOC108425346,LOC105912431 coding upstream 218816 13782762 ~ 13787434 (-)
LOC113531720 itih5 coding upstream 244463 13808409 ~ 13829508 (-)
G282060 NA non-coding downstream 131387 13427657 ~ 13427872 (-)
G282047 NA non-coding downstream 149933 13407613 ~ 13409326 (-)
G282006 NA non-coding downstream 186211 13320173 ~ 13373048 (-)
G281981 NA non-coding downstream 273541 13259152 ~ 13285718 (-)
G281964 NA non-coding downstream 348766 13168675 ~ 13210493 (-)
LOC117599591 NA non-coding upstream 7854 13571800 ~ 13575375 (-)
G282279 itih2,LOC107555817 non-coding upstream 269302 13833248 ~ 13837431 (-)
G282283 itih2,LOC106576198 non-coding upstream 274712 13838658 ~ 13840594 (-)
G282349 NA non-coding upstream 373710 13937656 ~ 13937879 (-)
G282368 NA non-coding upstream 390053 13953999 ~ 13969897 (-)
dusp16 dusp16 other downstream 1806346 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 1898932 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 1971235 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 2299847 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 2465083 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 1575979 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 2836975 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 3274589 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 3394566 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 4414817 17978763 ~ 17988280 (-)

Expression


Co-expression Network