G282279 (itih2,LOC107555817)


Basic Information

Item Value
gene id G282279
gene name itih2,LOC107555817
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 13833248 ~ 13837431 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU334559
GCAGAATAAAGAATTTGGGTGAGATTTGTAAGACTTTTAGCcctggtgcattgtgggtaataccTGACAATGCCTGCAGCTTTGCCACGGGCTTTGGCTTGAGCGTACAGGTTACGAGCAACAGTTTTGTCCTTCACTGAGCCAACAAATGTGATCCCGTTGACATTCGGTGAAGTTGTTGATAAAGGCTCGTTTGGGGATCTGCACATTGAAGCCGATACTCTGTGGGTTGGGGCCTGAGTTCACCACTGAACTTCTAACAGTGGTGTAAGCAAACCGTGATGTGATCCTGCTCTCAACCTTATAGCTCTTAACCGTGATATCATCTCCACGTACAGCCTCAAAgtcctcttcctcttcactGATCAATATGCTTCTtctGTATCTGGGACTTTCTTTGAGATGGTCATCATGATCTGACACCTCATCTTCCCACTCTCCATCAATAATGAACTCAAACGCCGAGCTTTGTGAGAAGAGCAGGGCGACCAGCAGCAGTGCTGGGAGCTTCATGGTGGccaaaaagaagagaaaactgtCCAGCAAAAGGCAAAATGGCCAGTGCTTCACACacgcacgctcacacacacatacacactctgagGCAAATTATCAGTCAGCAAGCTCCAGCCCCCTGAGCCTCATCAATATTTGT

Function

symbol description
itih2 Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to act upstream of or within hyaluronan metabolic process and negative regulation of peptidase activity. Predicted to be located in extracellular region. Is expressed in ball; extension; liver; and yolk syncytial layer. Orthologous to human ITIH2 (inter-alpha-trypsin inhibitor heavy chain 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU334559 True 655 lncRNA 0.47 5 13833248 13837431

Neighbor

gene id symbol gene type direction distance location
LOC113531720 itih5 coding downstream 3740 13808409 ~ 13829508 (-)
LOC113532385 kcna1a,kcna1l,LOC108279524,LOC108425346,LOC105912431 coding downstream 45814 13782762 ~ 13787434 (-)
LOC117599536 itih5 coding downstream 69458 13751523 ~ 13763790 (-)
sfmbt2 sfmbt2 coding downstream 108618 13665323 ~ 13724630 (-)
prkcq prkcq,LOC107748461,LOC107555829,LOC107675981 coding downstream 185051 13621297 ~ 13648197 (-)
kin kin coding upstream 14112 13851543 ~ 13858673 (-)
LOC113531970 LOC108279954 coding upstream 1036419 14873850 ~ 14885572 (-)
slc6a1l LOC108279609,LOC108427058,LOC107584717,LOC107689715,LOC107748475,LOC107597007,LOC101061665 coding upstream 1195217 15032648 ~ 15047471 (-)
LOC113531968 LOC108279915,LOC107597036 coding upstream 1222081 15059512 ~ 15078787 (-)
pyroxd1 pyroxd1,LOC108279593 coding upstream 1263925 15101356 ~ 15111265 (-)
LOC117599591 NA non-coding downstream 257873 13571800 ~ 13575375 (-)
G282116 rbm17,LOC107755150,LOC107748463 non-coding downstream 269302 13559259 ~ 13563946 (-)
G282060 NA non-coding downstream 405376 13427657 ~ 13427872 (-)
G282047 NA non-coding downstream 423922 13407613 ~ 13409326 (-)
G282006 NA non-coding downstream 460200 13320173 ~ 13373048 (-)
G282283 itih2,LOC106576198 non-coding upstream 1227 13838658 ~ 13840594 (-)
G282349 NA non-coding upstream 100225 13937656 ~ 13937879 (-)
G282368 NA non-coding upstream 116568 13953999 ~ 13969897 (-)
G282404 NA non-coding upstream 495501 14332932 ~ 14333132 (-)
G282409 NA non-coding upstream 535300 14372731 ~ 14373513 (-)
dusp16 dusp16 other downstream 2080335 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 2172921 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 2245224 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 2573836 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 2739072 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 1302494 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 2563490 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 3001104 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 3121081 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 4141332 17978763 ~ 17988280 (-)

Expression


Co-expression Network