G282283 (itih2,LOC106576198)


Basic Information

Item Value
gene id G282283
gene name itih2,LOC106576198
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 13838658 ~ 13840594 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU334567
CCTGATTGTGTGCCTTCACAAGCATCTGCACCGCCTTCAGCAGAGCCTCGTTGATGTTGGTGCctcCATTTGGTTTGATGTCCTGGATGTATTTCTTGGCTTCTGCCACCTGTAGAGAGGTTCCTGGGACAAGGTCTTCACTCCAGCAACGAACATTGTGATTGAAGTCAATGATGCTAAAATAGTCGTCCATAGTCAGGCTATCCAGGATAGTCTTCATGGCCTCCACTGTCTGCTTCATCTTCAGGCCCCACATGCTGCCGCTCACATCGATCACAA

Function

symbol description
itih2 Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to act upstream of or within hyaluronan metabolic process and negative regulation of peptidase activity. Predicted to be located in extracellular region. Is expressed in ball; extension; liver; and yolk syncytial layer. Orthologous to human ITIH2 (inter-alpha-trypsin inhibitor heavy chain 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU334567 True 279 lncRNA 0.50 3 13838658 13840594

Neighbor

gene id symbol gene type direction distance location
LOC113531720 itih5 coding downstream 9150 13808409 ~ 13829508 (-)
LOC113532385 kcna1a,kcna1l,LOC108279524,LOC108425346,LOC105912431 coding downstream 51224 13782762 ~ 13787434 (-)
LOC117599536 itih5 coding downstream 74868 13751523 ~ 13763790 (-)
sfmbt2 sfmbt2 coding downstream 114028 13665323 ~ 13724630 (-)
prkcq prkcq,LOC107748461,LOC107555829,LOC107675981 coding downstream 190461 13621297 ~ 13648197 (-)
kin kin coding upstream 10949 13851543 ~ 13858673 (-)
LOC113531970 LOC108279954 coding upstream 1033256 14873850 ~ 14885572 (-)
slc6a1l LOC108279609,LOC108427058,LOC107584717,LOC107689715,LOC107748475,LOC107597007,LOC101061665 coding upstream 1192054 15032648 ~ 15047471 (-)
LOC113531968 LOC108279915,LOC107597036 coding upstream 1218918 15059512 ~ 15078787 (-)
pyroxd1 pyroxd1,LOC108279593 coding upstream 1260762 15101356 ~ 15111265 (-)
G282279 itih2,LOC107555817 non-coding downstream 1227 13833248 ~ 13837431 (-)
LOC117599591 NA non-coding downstream 263283 13571800 ~ 13575375 (-)
G282116 rbm17,LOC107755150,LOC107748463 non-coding downstream 274712 13559259 ~ 13563946 (-)
G282060 NA non-coding downstream 410786 13427657 ~ 13427872 (-)
G282047 NA non-coding downstream 429332 13407613 ~ 13409326 (-)
G282349 NA non-coding upstream 97062 13937656 ~ 13937879 (-)
G282368 NA non-coding upstream 113405 13953999 ~ 13969897 (-)
G282404 NA non-coding upstream 492338 14332932 ~ 14333132 (-)
G282409 NA non-coding upstream 532137 14372731 ~ 14373513 (-)
G282410 NA non-coding upstream 549229 14389823 ~ 14390557 (-)
dusp16 dusp16 other downstream 2085745 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 2178331 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 2250634 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 2579246 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 2744482 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 1299331 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 2560327 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 2997941 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 3117918 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 4138169 17978763 ~ 17988280 (-)

Expression


Co-expression Network