XLOC_005279 (stambpl1)


Basic Information

Item Value
gene id XLOC_005279
gene name stambpl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 17117405 ~ 17152139 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010139
CTTGGAATCATCTTGGGAGATGACAGATGGATGCATAGGGAGGATCGAAGCCTGCAAGCCAAGCTCATAAACTCACCATGGACCAGGGCTTCAGTTTCAGCACGCTGAAGAAGTTAGCAGCTGAGCCGGATCACACTGATGTCACTCTGCCTGCTGTGGAACGTGTGCGGGCCCTCAGCAAAATGGGCTATAACATAGAAATAAACGAAGACATCGCCCCGAGACGCTACTTTCGCTCTGGTGTGGAGATGGAGCGTATGGCAGCTGTTTATCTAGAGGAGGGCAGCCTGGAGAATGCCTTTGTCCTCTACAACAAGTTCATCacTTTATTTGTTGAGAAACTCCCCAGCCACAGGGACTATCAGCAGTGCAACATCCCTGAGAAGCAGGTGATAATGAAGAAATTACAGGAAGTGGCTTTTCCACGCAAGGACCAATTAAAGAGACTTCTCCACGAGAAATACAGCAAAGAACACAGCGAATATCTGAAGAGTCAGACTCAAGCCATGGCCGTTGACATGTGTGGTGCACAACTGCAGAAGATGTCTATGCTGGAGGAAGAGCGGCAGCGTGTGGCACAGCTCAGGAAGATGCAGATCGAGTCTGAGCAGTTCCGTTACTTTGAGGACCAACTGCGTAGACAGGAGCTGGCCAGTCGGAGGGATGATGCTGGCCCCAAAGTGCCTGAACAAACTGACGGGTCCTGTTTATCCCAGACCCCCAGAAACCATGTGCGCCTTGACCCCAATCGTAACAAACCAGCAGCCCCTATTCCCAAACCGGCAGCCACCTTAGCAGCTGTACAGAaTCAGCGCGTGGAAGGCCTGAGGCGGGTTTTAATCCCACGAGACCTGACTTACAGGTTCCTTCTGCTGGCAGACAGTAACACAGCGAGAGGAATTGAAACGTGTGGAGTTCTCTGTGGAAAACTGACACATAATGAGTTTGTGCTGACTCACGTGATCGTCCCAAAGCAGTCTGCCGGTCCTGATTACTGTGACATGGAGAATGTGGAAGAGCTGTTCAGTTACCAGGATCATCATAACCTACTGACCCTAGGCTGGATCCATACTCACCCAACGCAGACGGCCTTCCTCTCCAGCGTGGATCTACATACACACAGCTCTTATCAGCTTATGCTACCTGAGGCCATCGCTATTGTTTGCGCACCTAAACACAATGACACAGGAGTTTTCCGGCTCACCAGTGCTGGAATGGGAGAAGTGGCCGGATGCAGATTGAAAGGTTTTCACCCCCACTCGAAAGACCCTCCTCTGTTCACTATTTGCAAGCACATTGTGGTGAAAGACTCAAAAACGATAGTCCTGGACCTCAGGTGACAGAGGAAGATGGAAAATATCAGTATCAACAAACCATTGAGAATTTCTATTTATATCTTTCTTTACTTGAAggcttttttgtatttatttattttacaaaaaggtACTGTGACAGAACCCCTCAGCTGCGCTGTTTGCTGTGAGCAGGTTTAGTGAAgttggtgtttttttgttttttttttttagatcatcatcatcatgcgcTTTTTGTTCGTGGCCAGTATGTTCTAGTCAGAACGTGTGGTATATTTGGACGCCCATTTTGCTTGTTTGTCCTCAAGATGGCGCCATTTATTAAGGCATACTGTACAATAAGGCTGCTAAAATGTGAACTGTTTTCAGGACTTTTTACAAAAGTGTGTATGATTTGCCTTTAATATATCACTGATATCACGTGCAGTTATCTCTTTAACACAATATACACTGAATAACcaatagtttgtttttttaacaaaaacctaacagatttttttagactCAGACTCAACTTTAGAGAgtccattattatttttaatggtcAAATTAATAAAGATGCAATATAAGGCAGGAGATCAactttaaaataatgcaatacaGACTATAATTTAGATTTTCTCTTCAGTTTAATAACACTTAGAATATCCCAATTACCCGATGTTGGTGAGtgagcttttttcttttctttctttttttctttttttttttctttttttttttacaatgtggatcTGGTTACAGGAAAGTGATTTTTGAAAAGTATAAACAAGATTGGGATCTCTTAGTGCACACCAAAGCTCCTGTAACAGAACAGGCCTGTTTACAGGCAACAGATTTCAGCCTTGACTGCGCTAATCTCAGGGTATACCATTCCCTCATTTTAACCAACTGATTTTGTTTTGGTCTCCACTACTTTTGTGGTTTGAGAAGGAAGCTTTTTTTGTGAGCAGTGGAAGATTGCAgaagtgtttgttttgtctgttgtGGATTGGATTGTTTCTCCAGCGTGTAGCTGTGTGTGCCAATGGCTCCACTGATGCTGTGCTGTTGTGGCTCTTTGTGAACAGGACAGTACAAGGAGGCTTTTGTGTCTGTTCAAGCACCATTCTTTCCTCAACGCCTTTGTTAATAAAAGTGACAAAGATAACAAAAAAATCTGGTTTCTCTTTGATACACAATGACACTGCAATCTGTAAATGATCTGGATTAAAACGTTACATCATTTTACAAAACTAAATGATTCATATATTGTGATGAAAAGAGCTGTTTGATTCATCACAGGCATGAAACCAGTCATATGCCTCAACATGTCAGATGTCTTTTgggcatttgatgtttttatttttcgttcattttaattttgtgggGAGTTAAAGGACATTTTTGACTTTCCTAAATTAATTGAaatcaactaattctcattgttTATGATTACTGGCAGataaaaattatttcaataatattattgttacaaataaaatgtatttatggtGGTTtcttctgctgtgacgacccctgataaatcagggactaaaccaaagaaaattaaag
>TCONS_00010140
atttttttccttatACAAagtacaaaaaagaaaagaaaaaaaggccaAATGCCTTGCAaacagattattattatcatcatcatcatcattattattattattatgcctattattattataaccttgaACTAAATGAAATGTAGTCCACATCGCAAGTACACTTaaggaaacaaataaataaatattaataaatgttttaaacaagcaCTTTAGAACTCTAATTCTAaagaacattaattattaacagttGCCAGAAGAAATGTAATGCTGATTTAAAGGAACTGTGCCCCATCTGGtggataaaaaaatacaaacatgttAGCCTATATCAGATTTATCCTTTTTTTAACTATTGTGACGAGAAAAATGGCACAAAATAAACGTAAACATGCCCCAATAAACACACAACAAATTACAGACTAGGCCTACAATGCctttaaaatgtgaataaactgTCATAAAAATCTGCGAGTGCTTGAAAATAATGTAGAATCAATAAATCAAAGCGTAAATGTCGTATTATTCAGCCATTCCCACTCTCTCCAGATGTCACTCTGATTGCGGCACAAAATCTAGTGAACTGGTCAGCGCAAAGGCATCAAAGAAAAATCCTGAAAATCCGGATGCTGCCTACATAGGCGGCTCGTGAGCGTTTGAAACACAGCCAGTGACCGGCAGCACCGCAGctccagcagcagcagctttCATCTGACTCGCAGAGCTCCTGGCGAACCGTCTGACATCGCAGGGTTATTCGCTCTGAAAGACAGCAATCAGCCATTTTAGCCCCGCGCGTATACCCATGCCAAAAGAACAAAGCTTCCATGAGGCACAAAGGCAAAAGACCGAGAGTTTCAGACAATAATAAAAACCTGCTCTTTTATTTACGCGAGTTGCCTGTTTCCGCGCTGAATTCTAGTAAGTGCCACATGCGACGATTGTAGGAATGTGGAGCATGGGATCACAACAGCCATTCACCTACAGCTTGGAATCATCTTGGGAGATGACAGATGGATGCATAGGGAGGATCGAAGCCTGCAAGCCAAGCTCATAAACTCACCATGGACCAGGGCTTCAGTTTCAGCACGCTGAAGAAGTTAGCAGCTGAGCCGGATCACACTGATGTCACTCTGCCTGCTGTGGAACGTGTGCGGGCCCTCAGCAAAATGGGCTATAACATAGAAATAAACGAAGACATCGCCCCGAGACGCTACTTTCGCTCTGGTGTGGAGATGGAGCGTATGGCAGCTGTTTATCTAGAGGAGGGCAGCCTGGAGAATGCCTTTGTCCTCTACAACAAGTTCATCacTTTATTTGTTGAGAAACTCCCCAGCCACAGGGACTATCAGCAGTGCAACATCCCTGAGAAGCAGGTGATAATGAAGAAATTACAGGAAGTGGCTTTTCCACGCAAGGACCAATTAAAGAGACTTCTCCACGAGAAATACAGCAAAGAACACAGCGAATATCTGAAGAGTCAGACTCAAGCCATGGCCGTTGACATGTGTGGTGCACAACTGCAGAAGATGTCTATGCTGGAGGAAGAGCGGCAGCGTGTGGCACAGCTCAGGAAGATGCAGATCGAGTCTGAGCAGTTCCGTTACTTTGAGGACCAACTGCGTAGACAGGAGCTGGCCAGTCGGAGGGATGATGCTGGCCCCAAAGTGCCTGAACAAACTGACGGGTCCTGTTTATCCCAGACCCCCAGAAACCATGTGCGCCTTGACCCCAATCGTAACAAACCAGCAGCCCCTATTCCCAAACCGGCAGCCACCTTAGCAGCTGTACAGAaTCAGCGCGTGGAAGGCCTGAGGCGGGTTTTAATCCCACGAGACCTGACTTACAGGTTCCTTCTGCTGGCAGACAGTAACACAGCGAGAGGAATTGAAACGTGTGGAGTTCTCTGTGGAAAACTGACACATAATGAGTTTGTGCTGACTCACGTGATCGTCCCAAAGCAGTCTGCCGGTCCTGATTACTGTGACATGGAGAATGTGGAAGAGCTGTTCAGTTACCAGGATCATCATAACCTACTGACCCTAGGCTGGATCCATACTCACCCAACGCAGACGGCCTTCCTCTCCAGCGTGGATCTACATACACACAGCTCTTATCAGCTTATGCTACCTGAGGCCATCGCTATTGTTTGCGCACCTAAACACAATGACACAGGAGTTTTCCGGCTCACCAGTGCTGGAATGGGAGAAGTGGCCGGATGCAGATTGAAAGGTTTTCACCCCCACTCGAAAGACCCTCCTCTGTTCACTATTTGCAAGCACATTGTGGTGAAAGACTCAAAAACGATAGTCCTGGACCTCAGGTGACAGAGGAAGATGGAAAATATCAGTATCAACAAACCATTGAGAATTTCTATTTATATCTTTCTTTACTTG

Function

symbol description
stambpl1 Predicted to enable Lys63-specific deubiquitinase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein K63-linked deubiquitination. Predicted to act upstream of or within protein deubiquitination. Predicted to be active in endosome and membrane. Orthologous to human STAMBPL1 (STAM binding protein like 1).

GO:

id name namespace
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0016579 protein deubiquitination biological_process
GO:0005768 endosome cellular_component
GO:0016020 membrane cellular_component
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0061578 Lys63-specific deubiquitinase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-100215-4 Predicted to enable Lys63-specific deubiquitinase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein K63-linked deubiquitination. Predicted to act upstream of or within protein deubiquitination. Predicted to be active in endosome and membrane. Orthologous to human STAMBPL1 (STAM binding protein like 1).

Ensembl:

ensembl_id ENSDARG00000003085

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010139 False 2867 mRNA 0.42 10 17117405 17147473
TCONS_00010140 True 2393 mRNA 0.45 11 17118863 17152139

Neighbor

gene id symbol gene type direction distance location
XLOC_005278 ifit9 coding downstream 82066 17033494 ~ 17035339 (-)
XLOC_005277 ifit10 coding downstream 89150 17025726 ~ 17028255 (-)
XLOC_005276 ifit11 coding downstream 93326 17019905 ~ 17024079 (-)
XLOC_005275 BX000534.1 coding downstream 118963 16997206 ~ 16998442 (-)
XLOC_005274 ifit12 coding downstream 126509 16989120 ~ 16990896 (-)
XLOC_005280 lipf coding upstream 6503 17158642 ~ 17201028 (-)
XLOC_005281 ptenb coding upstream 247713 17399852 ~ 17424174 (-)
XLOC_005282 papss2b coding upstream 306810 17458949 ~ 17479078 (-)
XLOC_005283 minpp1b coding upstream 330468 17482607 ~ 17492885 (-)
XLOC_005284 usp42 coding upstream 418536 17570675 ~ 17602958 (-)
XLOC_005273 NA non-coding downstream 150597 16964656 ~ 16966808 (-)
XLOC_005272 NA non-coding downstream 174157 16942204 ~ 16943248 (-)
XLOC_005269 BX000534.2 non-coding downstream 215646 16901645 ~ 16901759 (-)
XLOC_005265 BX322603.1 non-coding downstream 370858 16743052 ~ 16746547 (-)
XLOC_005289 dre-mir-2192 non-coding upstream 554653 17706792 ~ 17706901 (-)
XLOC_005291 NA non-coding upstream 569662 17721801 ~ 17727540 (-)
XLOC_005295 NA non-coding upstream 1072395 18224534 ~ 18227730 (-)
XLOC_005298 NA non-coding upstream 1301068 18453207 ~ 18454407 (-)
XLOC_005303 AL772266.1 non-coding upstream 1586274 18738413 ~ 18738529 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_00846790_00858096 STAMBPL1 coding CI01000063 null 846622 ~ 859378 (-)