G284135


Basic Information

Item Value
gene id G284135
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 17521426 ~ 17523643 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU336619
CATTTTTTACCTCCCCTAGTGTATCTTACGTGGAAGTGCGGCTGTCCCGTGACCACTTCTTTATCTGTGAGAGTTTGTTGATAAGGAAGATGCCTTTGCCCTGAGCCTTCCCACAAGGCTTCATAATCCATGTGCTGGATGGACTCTTACGGAATTCTTCCACAAAAAGGTTGTAGTCCGCTGGCAGCATGAACGTCACCGGCACGAAATCTGTCCACAGCAGACAAAAAGAGACAGCTAAGACGAAGCAGAGTACCCATTTTGACAAAACAGACGTGTGGGCAGACAGGTTGTGAAGAGTACCGAGATCCTTCCTTGTCAGCTCATAGTGGTTTGGGAAGTGGTTAACCATCTGATCATCAGACAGGCGGTAACCCGTGTCTACGCTGAACACATTGCGAATAGTCTGGATGCTCATCCTGCAGAGGACACATTCAATCATGACCAAGTAAAAGTTCCAGTCTTCGGTGTCGGTCACTTGGATCCATCCTCTCTTCTCGAAGTTGTTGACAAGTACAGATTTCTCTATGTCGGTCACCCACTTCACCTTCCCAGCCATCACTCCTCCTGTAGGGATGGACAGAACCTTCTCCTCATTGCAGGGGGCAAAGAGATAGTCTGCCTCCACCCATCAAGTACCAATCCTAAAGATCATGAAGATCAtttagtgtaacacacacacacacacacacacacacacacacttccaccaTCCAGGATGCCTTTTAATCAGGACACTCACAGCTCAAGGCCAGTGCAGCATCCCAGCTAGCGAactagcagcagcagcagcagcatctaCTGAGCTTCAAAAcagctggattaaaaaaatgtcgTCACCTGTTACCCTTTCCTTAAACGCAGCTCATGCCAAATTCTCAATTATTTTTCACTCCCAggttattttatcttttaaaagcATCGTTTTCTAGGCGCACAGTGAAACAactacacaacaacacaacacaggtGCTTCCTGGGATGAGGAAGTCCATGGCAACGAACCTGGCATGCTTGTATTCCGAAAAATCCCGCCTCCCGAGCATTCTGATTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU336619 True 1056 lncRNA 0.47 4 17521426 17523643

Neighbor

gene id symbol gene type direction distance location
LOC113531974 LOC108279712 coding downstream 14929 17498388 ~ 17506497 (-)
LOC117599443 LOC108279803 coding downstream 26639 17486811 ~ 17494787 (-)
LOC117599538 LOC108279803 coding downstream 36005 17484558 ~ 17485421 (-)
slc37a3 slc37a3,LOC107562143,LOC107758206,LOC107601005,LOC106609230 coding downstream 40592 17462955 ~ 17480834 (-)
sapcd1 LOC108280126 coding downstream 82348 17434442 ~ 17439078 (-)
ckap4 ckap4 coding upstream 67477 17591120 ~ 17594317 (-)
LOC113531978 LOC108279914 coding upstream 88247 17611890 ~ 17616249 (-)
gnsa gns,gnsa,LOC107658926,LOC107656403 coding upstream 272241 17795884 ~ 17809289 (-)
ano2b LOC108279462,LOC108425378 coding upstream 383985 17907628 ~ 17971244 (-)
strip2 strip2,LOC107656389 coding upstream 466986 17990629 ~ 18023472 (-)
G284134 NA non-coding downstream 6186 17513610 ~ 17515240 (-)
G284131 NA non-coding downstream 14281 17506876 ~ 17507145 (-)
G284003 NA non-coding downstream 478146 17041627 ~ 17043280 (-)
LOC117599589 NA non-coding downstream 901708 16618712 ~ 16619718 (-)
G283546 NA non-coding downstream 1071660 16448439 ~ 16449766 (-)
G284146 pacsin2,LOC108279716,LOC103038884,LOC107725788 non-coding upstream 24689 17548332 ~ 17553258 (-)
G284145 pacsin2,LOC108279716,LOC103038884 non-coding upstream 34764 17558407 ~ 17564955 (-)
G284165 NA non-coding upstream 71010 17594653 ~ 17594899 (-)
G284273 NA non-coding upstream 194262 17717905 ~ 17718238 (-)
G284294 NA non-coding upstream 238388 17762031 ~ 17764929 (-)
phf21b phf21b other downstream 493561 16958512 ~ 17027865 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other downstream 668031 16838535 ~ 16853395 (-)
alg12 alg12 other downstream 1114563 16400921 ~ 16406863 (-)
LOC113531972 muc19,LOC108280038 other downstream 2337351 15139925 ~ 15184075 (-)
dusp16 dusp16 other downstream 5768513 11721063 ~ 11752913 (-)
LOC113532261 smkr1 other upstream 455120 17978763 ~ 17988280 (-)
ahcyl2b ahcyl2,LOC106609228 other upstream 504091 18027734 ~ 18067585 (-)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 other upstream 544955 18068598 ~ 18082361 (-)
trnaa-ugc_10 NA other upstream 559595 18083238 ~ 18083309 (-)
trnaa-ugc_11 NA other upstream 560140 18083783 ~ 18083854 (-)

Expression


Co-expression Network