G284273


Basic Information

Item Value
gene id G284273
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 17717905 ~ 17718238 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU336792
aggaaaccagagtagCTGAAGAAAACACCTTGTTCCTAATGCTTCCTTCACGTGCGATCAGAGTGATCCTACTTGCTACTGTTATATTCACATGCTGTGTTGTCAGAAAGATCCTGAAACATGGACGACGCCacgttcattcatttatatttcttttttcttttactctgaCTGAATGACTTGAGCGGTCACGCatgtgtagcttctcagtggGAAACGCATAGTTACAATGATTCTGAGAGCAAGTGAAGGCAGCATACAGCATGCTGCATGAGTACGTCAGATGTGACGTTTAATCAAGAAACCTCTGTAGGAGTTACATGCTCACTTCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU336792 True 334 lncRNA 0.43 1 17717905 17718238

Neighbor

gene id symbol gene type direction distance location
LOC113531978 LOC108279914 coding downstream 101656 17611890 ~ 17616249 (-)
ckap4 ckap4 coding downstream 123588 17591120 ~ 17594317 (-)
LOC113531974 LOC108279712 coding downstream 211408 17498388 ~ 17506497 (-)
LOC117599443 LOC108279803 coding downstream 223118 17486811 ~ 17494787 (-)
LOC117599538 LOC108279803 coding downstream 232484 17484558 ~ 17485421 (-)
gnsa gns,gnsa,LOC107658926,LOC107656403 coding upstream 77646 17795884 ~ 17809289 (-)
ano2b LOC108279462,LOC108425378 coding upstream 189390 17907628 ~ 17971244 (-)
strip2 strip2,LOC107656389 coding upstream 272391 17990629 ~ 18023472 (-)
slc5a8 LOC108279688 coding upstream 379389 18097627 ~ 18106446 (-)
arl1 arl1 coding upstream 419557 18137795 ~ 18141774 (-)
G284165 NA non-coding downstream 123006 17594653 ~ 17594899 (-)
G284145 pacsin2,LOC108279716,LOC103038884 non-coding downstream 152950 17558407 ~ 17564955 (-)
G284146 pacsin2,LOC108279716,LOC103038884,LOC107725788 non-coding downstream 164647 17548332 ~ 17553258 (-)
G284135 NA non-coding downstream 194262 17521426 ~ 17523643 (-)
G284134 NA non-coding downstream 202665 17513610 ~ 17515240 (-)
G284294 NA non-coding upstream 43793 17762031 ~ 17764929 (-)
G284295 NA non-coding upstream 72296 17790534 ~ 17790763 (-)
G284323 NA non-coding upstream 132219 17850457 ~ 17850894 (-)
G284349 NA non-coding upstream 177097 17895335 ~ 17898230 (-)
G284352 NA non-coding upstream 182787 17901025 ~ 17901267 (-)
phf21b phf21b other downstream 690040 16958512 ~ 17027865 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other downstream 864510 16838535 ~ 16853395 (-)
alg12 alg12 other downstream 1311042 16400921 ~ 16406863 (-)
LOC113531972 muc19,LOC108280038 other downstream 2533830 15139925 ~ 15184075 (-)
dusp16 dusp16 other downstream 5964992 11721063 ~ 11752913 (-)
LOC113532261 smkr1 other upstream 260525 17978763 ~ 17988280 (-)
ahcyl2b ahcyl2,LOC106609228 other upstream 309496 18027734 ~ 18067585 (-)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 other upstream 350360 18068598 ~ 18082361 (-)
trnaa-ugc_10 NA other upstream 365000 18083238 ~ 18083309 (-)
trnaa-ugc_11 NA other upstream 365545 18083783 ~ 18083854 (-)

Expression


Co-expression Network