G284520


Basic Information

Item Value
gene id G284520
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 18088654 ~ 18088942 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU337055
CAGCTATATCCTGAAACTACTTCCCTCTAGCAAGCAGTGAATGTTGTTCTAACACAAGTGACATGCTTTAGGCTCAGTACCTTCACAAGTTTTCTCCATGGTCTGCAcgtgttttttcattttcatcattccAGTTTCTGATATGTTTTGTAATGAAGTACTCTTTACAGGATTAAAAGGAGCCCTGTGGAGATGCCGGGGATTGAACCCGGGGCCTCATACATGCAAAGCATGCGCTCTACCACTGAGCTACATCCCCTGCATGCGTTGTCATTAAGGCTACCCGCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU337055 True 289 lncRNA 0.45 1 18088654 18088942

Neighbor

gene id symbol gene type direction distance location
strip2 strip2,LOC107656389 coding downstream 65182 17990629 ~ 18023472 (-)
ano2b LOC108279462,LOC108425378 coding downstream 117410 17907628 ~ 17971244 (-)
gnsa gns,gnsa,LOC107658926,LOC107656403 coding downstream 279365 17795884 ~ 17809289 (-)
LOC113531978 LOC108279914 coding downstream 472405 17611890 ~ 17616249 (-)
ckap4 ckap4 coding downstream 494337 17591120 ~ 17594317 (-)
slc5a8 LOC108279688 coding upstream 8685 18097627 ~ 18106446 (-)
arl1 arl1 coding upstream 48853 18137795 ~ 18141774 (-)
tnnt2e LOC108425385,LOC108279691,LOC107658902,LOC107725993 coding upstream 56930 18145872 ~ 18156560 (-)
tnni4a zgc:101560,LOC108279438,LOC107656258,LOC107725970,LOC107581287,LOC108425328,LOC107658770,LOC107584059 coding upstream 136558 18225500 ~ 18233739 (-)
dock4b dock4b,LOC108279862,LOC108425388,LOC107656358,LOC106609220 coding upstream 395498 18484440 ~ 18593405 (-)
G284352 NA non-coding downstream 187387 17901025 ~ 17901267 (-)
G284349 NA non-coding downstream 190424 17895335 ~ 17898230 (-)
G284323 NA non-coding downstream 237760 17850457 ~ 17850894 (-)
G284295 NA non-coding downstream 297891 17790534 ~ 17790763 (-)
G284294 NA non-coding downstream 323725 17762031 ~ 17764929 (-)
G284559 NA non-coding upstream 91437 18180379 ~ 18184992 (-)
G284590 NA non-coding upstream 257511 18346453 ~ 18346836 (-)
G284862 NA non-coding upstream 731000 18819942 ~ 18823200 (-)
G284866 NA non-coding upstream 741983 18830925 ~ 18831139 (-)
G284882 NA non-coding upstream 772903 18861845 ~ 18862152 (-)
trnaa-ugc_11 NA other downstream 4800 18083783 ~ 18083854 (-)
trnaa-ugc_10 NA other downstream 5345 18083238 ~ 18083309 (-)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 other downstream 6293 18068598 ~ 18082361 (-)
ahcyl2b ahcyl2,LOC106609228 other downstream 21069 18027734 ~ 18067585 (-)
LOC113532261 smkr1 other downstream 100374 17978763 ~ 17988280 (-)
trnaa-ugc_13 NA other upstream 1609 18090551 ~ 18090622 (-)
trnaa-ugc_14 NA other upstream 3275 18092217 ~ 18092544 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other upstream 67882 18156824 ~ 18211704 (-)
trnae-cuc_38 NA other upstream 123380 18212322 ~ 18212393 (-)
LOC113532190 NA other upstream 609979 18698921 ~ 18747833 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_09884959_09889794 NA coding CI01000006 null 9884439 ~ 9890289 (+)