LOC113532190


Basic Information

Item Value
gene id LOC113532190
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 18698921 ~ 18747833 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU337354
ACAGGAACAAACAACGAACAACATGGCGTCTTCATTGACTCCCGCAAGCGTGTTGGCGGTGCTGGGTTTCTTCTTCCTGAGTGTCCTGCAGCCCGTGGAGGCTTATGACAGCGGGGACGCCGTGGCTCTGCTCTTGGGGATGGCCATCACGGTGGTCGGCTTATGCGCGTGCCTGGGCTGGTACTCCCGGAGACGCAGCGGGCAGTTCTGACACGACATGCAGGCCTGTGGTCCGGAAATGTCGCTTCTCGCCTCCTGAAACCCCGAAACGCCGCGCCAGCTGGTCGCTCTTTCCTGAACGTGTGGCGGCTAACAGACTCTTGACACTATAGtggaaggagaaggagaaggagactCGACTCCAGGGTCCGAGTTacaaagagggagagacagtATGCTGTTTAAAAGCCAACATGCACTTccagtggacacacacacacacacacacacacacacacatacacatacacacacacacacacatct
>XM_026923414.2
GCAGGAAGATCATATGACCCACAGTGATCACAGGAACAAACAACGAACAACATGGCGTCTTCATTGACTCCCGCAAGCGTGTTGGCGGTGCTGGGTTTCTTCTTCCTGAGTGTCCTGCAGCCCGTGGAGGCTTATGACAGCGGGGACGCCGTGGCTCTGCTCTTGGGGATGGCCATCACGGTGGTCGGCTTATGCGCGTGCCTGGGCTGGTACTCCCGGAGACGCAGCGGGCAGTTCTGACACGACATGCAGGCCTGTGGTCCGGAAATGTCGCTTCTCGCCTCCTGAAACCCCGAAACGCCGCGCCAGCTGGTCGCTCTTTCCTGAACGTGTGGCGGCTAACAGACTCTTGACACTATAGtggaaggagaaggagaaggagactCGACTCCAGGGTCCGAGTTacaaagagggagagacagtATGCTGTTTAAAAGCCAACATGCACTTccagtggacacacacacacacacacacacacacacacatacacatctggATCATGGCATTCAAGCACCTCTGTACAACATCTGGACTTCCCTATACTTTGTTATACGATGACGTCCATCATTACACGACTCcactctcttcttttcttcttgctatacacacagctctgtcattCCACTGTTCCCTGAAACATGTGCCCTGAGGGCATTCTTCAGATTTTTATGCACTGAAAGTCATGTTGCCCCTGCTGTTTTGCACTTAAACtttgtgctcttaatatagtgaaCTATACTTGAAGGGTCACTGTTTCTTGCATATgcttattttctgtaataaactCCATGAATGCTGCA

Function

GO: NA

KEGG:

id description
ko00970 Aminoacyl-tRNA biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU337354 False 486 lncRNA 0.56 2 18698921 18747804
XM_026923414.2 True 803 mRNA 0.50 1 18747031 18747833

Neighbor

gene id symbol gene type direction distance location
tmem168a LOC108280006,LOC108425390,LOC103042505 coding downstream 23354 18665209 ~ 18675567 (-)
dock4b dock4b,LOC108279862,LOC108425388,LOC107656358,LOC106609220 coding downstream 105516 18484440 ~ 18593405 (-)
tnni4a zgc:101560,LOC108279438,LOC107656258,LOC107725970,LOC107581287,LOC108425328,LOC107658770,LOC107584059 coding downstream 465182 18225500 ~ 18233739 (-)
tnnt2e LOC108425385,LOC108279691,LOC107658902,LOC107725993 coding downstream 542361 18145872 ~ 18156560 (-)
arl1 arl1 coding downstream 557147 18137795 ~ 18141774 (-)
ppp1r3aa NA coding upstream 33914 18781747 ~ 18787897 (-)
tfec tfec coding upstream 347559 19095392 ~ 19107426 (-)
lta4h lta4h,LOC107656327,LOC106576033 coding upstream 392612 19140445 ~ 19161281 (-)
cdk17 cdk17,LOC107656329,LOC107658862 coding upstream 442663 19190496 ~ 19247363 (-)
LOC117599463 NA coding upstream 504990 19252823 ~ 19254197 (-)
G284590 NA non-coding downstream 352085 18346453 ~ 18346836 (-)
G284559 NA non-coding downstream 513929 18180379 ~ 18184992 (-)
G284520 NA non-coding downstream 609979 18088654 ~ 18088942 (-)
G284352 NA non-coding downstream 797654 17901025 ~ 17901267 (-)
G284349 NA non-coding downstream 800691 17895335 ~ 17898230 (-)
G284862 NA non-coding upstream 72109 18819942 ~ 18823200 (-)
G284866 NA non-coding upstream 83092 18830925 ~ 18831139 (-)
G284882 NA non-coding upstream 114012 18861845 ~ 18862152 (-)
G284885 mdfic,LOC107095313,LOC106906624,LOC106523521 non-coding upstream 120224 18868057 ~ 18938095 (-)
LOC117599567 NA non-coding upstream 170563 18918396 ~ 18922897 (-)
trnae-cuc_38 NA other downstream 486528 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 487217 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 606377 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 608299 18090551 ~ 18090622 (-)
trnaa-ugc_11 NA other downstream 615067 18083783 ~ 18083854 (-)
rap1b rap1b,LOC106576640,LOC107695907 other upstream 930450 19678283 ~ 19735232 (-)
G285607 NA other upstream 1565234 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 2712993 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 3738403 22486236 ~ 22489467 (-)

Expression


Co-expression Network