G284862


Basic Information

Item Value
gene id G284862
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 18819942 ~ 18823200 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU337444
AGAATCTGTGTGAGGAGCTACGGCTCCGTTCGCACCTCCTCCGCTAGCGCTGTGCTCCGAAAGAGCGGCAGCACACGCTCACTCGCTcccacacacgcgcacacacacgctgtgCCTTGCTCGCTCCTGCTTTCCGACTCGTTTGGTTGCGGGGATTTAACAAACGCGTGGCGCTGCAGGAGGATGCTGGGGCTTCCTGTGATGCTCCCGGAGAAAGCTTTGGACTGCCAAGGTCAACGAGGACGAACAATCCCAGTAGCGGCACTTGAGCAGTGGCAGAAGAAAGCGAGCGGCTGGTGGGTGGGGGGAAGGAACCGCTGGCATGCGTGGTGGTCACCGCTATGCCGCTCCAGCTCTCAGCTCTCTACATGCGATGGCATCATTTCCATAGCAACCCGCTCTAACGATTCATTTTCAATTAGAgcagacacaaaacacactgcccTGAGCCAGTAGGCAGTGTCAAGAGCCCATCTCCATCTTCCTCGCCCCCACATGGGGGGGAGTGATCCAGCCTCTTCGAGTCAAAGACACCAAGCTATCTTACAGTAATGCTCAAAATCCACTCGTTCAAATCAGACTCATATTCACATCAGTGCAAAAATCAACGGCCTGTTAACAATTAACAGAGATTTAATGCTATAGTGTTTACTGTGAAATACAGATGAATGAACAAGACTTGAGCGAGGCAGGGCTTGTGTGCAGTCACTGAGAATGTGATGTGTTTCAGGCCTTTCAGAACTGCCACAAGCAGCAAAGCTGTTCTCTCTGGCTAGAGAGTTATGCACTTGAGTTCATATCCACCTCCAGTCTCCCTCCCCGCTGTGCAGCTGATGTCCGATCTGATGCTGTGCATGCTGCACTTGTAAACACTGCCCTAATAAACTCACCGGTGTGGTTTCTATCT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032502 developmental process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU337444 True 907 lncRNA 0.52 2 18819942 18823200

Neighbor

gene id symbol gene type direction distance location
ppp1r3aa NA coding downstream 32045 18781747 ~ 18787897 (-)
gpr85 gpr85,LOC106576049,LOC107584006,LOC106609248 coding downstream 75780 18739775 ~ 18744162 (-)
tmem168a LOC108280006,LOC108425390,LOC103042505 coding downstream 144375 18665209 ~ 18675567 (-)
dock4b dock4b,LOC108279862,LOC108425388,LOC107656358,LOC106609220 coding downstream 226537 18484440 ~ 18593405 (-)
tnni4a zgc:101560,LOC108279438,LOC107656258,LOC107725970,LOC107581287,LOC108425328,LOC107658770,LOC107584059 coding downstream 586203 18225500 ~ 18233739 (-)
tfec tfec coding upstream 272192 19095392 ~ 19107426 (-)
lta4h lta4h,LOC107656327,LOC106576033 coding upstream 317245 19140445 ~ 19161281 (-)
cdk17 cdk17,LOC107656329,LOC107658862 coding upstream 367296 19190496 ~ 19247363 (-)
LOC117599463 NA coding upstream 429623 19252823 ~ 19254197 (-)
LOC117599464 NA coding upstream 437513 19260713 ~ 19262044 (-)
G284590 NA non-coding downstream 473106 18346453 ~ 18346836 (-)
G284559 NA non-coding downstream 634950 18180379 ~ 18184992 (-)
G284520 NA non-coding downstream 731000 18088654 ~ 18088942 (-)
G284352 NA non-coding downstream 918675 17901025 ~ 17901267 (-)
G284349 NA non-coding downstream 921712 17895335 ~ 17898230 (-)
G284866 NA non-coding upstream 7725 18830925 ~ 18831139 (-)
G284882 NA non-coding upstream 38645 18861845 ~ 18862152 (-)
G284885 mdfic,LOC107095313,LOC106906624,LOC106523521 non-coding upstream 44857 18868057 ~ 18938095 (-)
LOC117599567 NA non-coding upstream 95196 18918396 ~ 18922897 (-)
G285245 NA non-coding upstream 465391 19288591 ~ 19290806 (-)
LOC113532190 NA other downstream 72109 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 607549 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 608238 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 727398 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 729320 18090551 ~ 18090622 (-)
rap1b rap1b,LOC106576640,LOC107695907 other upstream 855083 19678283 ~ 19735232 (-)
G285607 NA other upstream 1489867 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 2637626 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 3663036 22486236 ~ 22489467 (-)

Expression


Co-expression Network