LOC117599567


Basic Information

Item Value
gene id LOC117599567
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 18918396 ~ 18922897 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU337489
GCTTTTGTTCATGGTTTTATCCTGACATTTATAGAGTCTGAGCTGAGTCACGAAACAGTCAAGAGCAAGTTGAGTCATGAGTCAGTCAGCGCGCAACTTAAGTGTGATTCAAGACACTCGAGAAACTCTGCTACACACTTAAATACAATCCTTACGAAGGACTTCAGGAAAACCCCAACTTTATCATCAGAGACATGGTCTCCTGACATACCACGAGCAATGCGTTTCAGAACAGACcagcaaaaacacactgaaattaGGCGagcaaagcagttactgaagatggacgGCTGGACAGATGATTGGTGCAGCCCAGAGGAACGTAGGAGCATCCGAAGGCATTTATTTTGAACATCACtatatgcattttaaatatttaaaaaaaatattttaaataatcccCCTTATAATctatattcatacatttatacatttaacaaaaatacaatgcaattttatataaacaattttatatttgactCAAATTTTTGTCAGCCAAATTATACTCTGccttgtctgtctctgtgtctccccTGTACCTCCTGAACTGCATTTCTGCAACCAGCTATTTGAGGGCTGTATAGAAGAAAAGCTATGTATGCTATTGATCGCAAAACTCAGCAATGACATGGGGAtacaaaaaatatgcatttgcTTCTCTagaatgaatctttttttttgtttgtttcaaacCCAAACTGTGATATGTTAATACACCCAG
>XR_004579967.1
TTTATAGAGTCTGAGCTGAGTCACGAAACAGTCAAGAGCAAGTTGAGTCATGAGTCAGTCAGCGCGCAACTTAAGTGTGATTCAAGACACTCGAGAAACTCTGCTACACACTTAAATACAATCCTTACGAAGGACTTCAGGAAAACCCCAACTTTATCATCAGAGACATGGTCTCCTGACATACCACGAGCAATGCGTTTCAGAACAGACcagcaaaaacacactgaaattaGGCGagcaaagcagttactgaagatggacgGCTGGACAGATGATTGGTGCAGCCCAGAGGAACGTAGGAGCATCCGAAGGCATTTATTTTGAACATCACtatatgcattttaaatatttaaaaaaaatattttaaataatcccCCTTATAATctatattcatacatttatacatttaacaaaaatacaatgcaattttatataaacaattttatatttgactCAAATTTTTGTCAGCCAAATTATACTCTGccttgtctgtctctgtgtctccccTGTACCTCCTGAACTGCATTTCTGCAACCAGCTATTTGAGGGCTGTATAGAAGAAAAGCTATGTATGCTATTGATCGCAAAACTCAGCAATGACATGGGGAtacaaaaaatatgcatttgcTTCTCTagaatgaatctttttttttgtttgtttcaaacCCAAACTGTGATATGTTAATACACCCAGACAACAGGTGACCAAAATCCTTAAAACATGTCATCGATCATTTCAAAGTAACTAATAAAA

Function

GO: NA

KEGG:

id description
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05416 Viral myocarditis
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
TU337489 False 721 lncRNA 0.37 3 18918456 18922897
XR_004579967.1 True 754 lncRNA 0.37 3 18918396 18922870

Neighbor

gene id symbol gene type direction distance location
ppp1r3aa NA coding downstream 130499 18781747 ~ 18787897 (-)
gpr85 gpr85,LOC106576049,LOC107584006,LOC106609248 coding downstream 174234 18739775 ~ 18744162 (-)
tmem168a LOC108280006,LOC108425390,LOC103042505 coding downstream 242829 18665209 ~ 18675567 (-)
dock4b dock4b,LOC108279862,LOC108425388,LOC107656358,LOC106609220 coding downstream 324991 18484440 ~ 18593405 (-)
tnni4a zgc:101560,LOC108279438,LOC107656258,LOC107725970,LOC107581287,LOC108425328,LOC107658770,LOC107584059 coding downstream 684657 18225500 ~ 18233739 (-)
tfec tfec coding upstream 172495 19095392 ~ 19107426 (-)
lta4h lta4h,LOC107656327,LOC106576033 coding upstream 217548 19140445 ~ 19161281 (-)
cdk17 cdk17,LOC107656329,LOC107658862 coding upstream 267599 19190496 ~ 19247363 (-)
LOC117599463 NA coding upstream 329926 19252823 ~ 19254197 (-)
LOC117599464 NA coding upstream 337816 19260713 ~ 19262044 (-)
G284882 NA non-coding downstream 56244 18861845 ~ 18862152 (-)
G284866 NA non-coding downstream 87257 18830925 ~ 18831139 (-)
G284862 NA non-coding downstream 95196 18819942 ~ 18823200 (-)
G284590 NA non-coding downstream 571560 18346453 ~ 18346836 (-)
G284559 NA non-coding downstream 733404 18180379 ~ 18184992 (-)
G285245 NA non-coding upstream 365694 19288591 ~ 19290806 (-)
LOC113532309 NA non-coding upstream 433663 19356560 ~ 19385863 (-)
G285287 NA non-coding upstream 482182 19405079 ~ 19405317 (-)
G285288 wnt7b,LOC107388424,LOC107549584,LOC108429451,LOC103028473 non-coding upstream 483006 19405903 ~ 19406128 (-)
G285289 wnt7b,wnt7ba,LOC107725526,LOC107664847 non-coding upstream 485373 19408270 ~ 19408805 (-)
LOC113532190 NA other downstream 170563 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 706003 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 706692 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 825852 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 827774 18090551 ~ 18090622 (-)
rap1b rap1b,LOC106576640,LOC107695907 other upstream 755386 19678283 ~ 19735232 (-)
G285607 NA other upstream 1390170 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 2537929 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 3563339 22486236 ~ 22489467 (-)

Expression


Co-expression Network