G285245


Basic Information

Item Value
gene id G285245
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19288591 ~ 19290806 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU337873
CAAACCTCGTCCCTTTATCTCACCTCCCATTCTGGGTAGTTGTGCTCCTGCAGGGTGCCCTTGTGGGTGCCAGGTAGCACCACCAGGCAGCCATTCTGGCGAGTTACTTTCTCCATTGCTGTCCAGGCACACACGATGCGATCAGCTGGCCGGAATGGGAAGTAGTGCAGGTCCTGGTGCATGGGGTGGCGAGAGGTCTTCTTTCCTGAGCCACAGCATGCACAGCTGTACACTATTGCTCTGAGATTACATCTTGGTCAAAAGATCGATGTGCATtttagtatgtgtgtatgttacctGTATCAGGAGGTTTGTTGATGAGCATGGTGTGCATAGCCATGATGTTGGGGCCCGTGAAACACTCAACATATTTTAGAATCTGTTCAAGTACAAGCCTAATTTGTTACAATGCAAATATTCCTCTTAAAATCCTAAAATCAAAGCTCAAACTTTAAAGCTTTGTCTGCCTTAACCTACTAGGGTTACAAACATCatagtgtttgtgtatatatatatatataggtggaCCTGAGGCAGAGTGCAATAGCGGAACAGCTCCAGGTCTTCTTGGAAGTCCTGAAGTTTAGTCACAGCCTTCTCCCCCTGCACAAACTCAGATTTAGCGATGGACACGTCTCTCATTACTACCAAGCCAGGAATCTTCACATCTCTTTTACAAATACGCTCAAACTCTTTCCtAATCTATTGATGTCCTCTTCGGAAACCAGGTTTTTGATCAAAATGAAGCCGTCTTCTTCATAAGCAAGTCTTTGTTCTGGAGACAGCACATCTGTATCAAAGGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU337873 True 804 lncRNA 0.45 2 19288591 19290806

Neighbor

gene id symbol gene type direction distance location
LOC113531838 NA coding downstream 4092 19283150 ~ 19284499 (-)
LOC117599574 NA coding downstream 15897 19271595 ~ 19272694 (-)
LOC117599464 NA coding downstream 26547 19260713 ~ 19262044 (-)
LOC117599463 NA coding downstream 34394 19252823 ~ 19254197 (-)
cdk17 cdk17,LOC107656329,LOC107658862 coding downstream 41228 19190496 ~ 19247363 (-)
mcm10 mcm10 coding upstream 23807 19314613 ~ 19335240 (-)
pparaa ppara coding upstream 44855 19335661 ~ 19355138 (-)
atxn10 atxn10 coding upstream 121024 19411830 ~ 19428263 (-)
def6c LOC108279918 coding upstream 142080 19432886 ~ 19444451 (-)
cbll1 cbll1,LOC108438797 coding upstream 225548 19516354 ~ 19519608 (-)
G284885 mdfic,LOC107095313,LOC106906624,LOC106523521 non-coding downstream 350496 18868057 ~ 18938095 (-)
LOC117599567 NA non-coding downstream 365694 18918396 ~ 18922897 (-)
G284882 NA non-coding downstream 426439 18861845 ~ 18862152 (-)
G284866 NA non-coding downstream 457452 18830925 ~ 18831139 (-)
G284862 NA non-coding downstream 465391 18819942 ~ 18823200 (-)
LOC113532309 NA non-coding upstream 65754 19356560 ~ 19385863 (-)
G285287 NA non-coding upstream 114273 19405079 ~ 19405317 (-)
G285288 wnt7b,LOC107388424,LOC107549584,LOC108429451,LOC103028473 non-coding upstream 115097 19405903 ~ 19406128 (-)
G285289 wnt7b,wnt7ba,LOC107725526,LOC107664847 non-coding upstream 117464 19408270 ~ 19408805 (-)
LOC117599445 NA non-coding upstream 138364 19429170 ~ 19430559 (-)
LOC113532190 NA other downstream 540758 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 1076198 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 1076887 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 1196047 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 1197969 18090551 ~ 18090622 (-)
rap1b rap1b,LOC106576640,LOC107695907 other upstream 387477 19678283 ~ 19735232 (-)
G285607 NA other upstream 1022261 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 2170020 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 3195430 22486236 ~ 22489467 (-)

Expression


Co-expression Network