LOC113532309


Basic Information

Item Value
gene id LOC113532309
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19356560 ~ 19385863 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU337891
CGTAATGTCATCGATCAAGAGCTGCACGACCAGTGAAGCACATCAACACAGATGCTTTTAAGGATTTACTAGACTCCATGTGATAGTAGCTAAAGACTGCTACACAGAAGAGTgtaaaagtttgtgcccccatCGATTCCGggtggaaaaaagggaaaatgatGCATAGAAATGTTGGGTGTATTATGAAACAAGACAAGAATCTGAAACGTAAGGCAAAAtgagcaatatatatatatatatatatatttgcccTGATCTTGACCTGATCtgaagaaggaaggaagcatAAAAGGAAAAGCATGGACATACAAGTTATTAGAAATAATTTACATGATATTCAGAAAGAGGGATGCAAACATTTGAACTTATATATTGACCATTTTCATTACATGTGATAATGAAGTAATCATTGTGAAACCTAACACATAAAAAGTCTTGTTGCTATAAATCGAATGTCTtcattttgtcttcttttttcttcaagCAAAGGCAAACTTTTGTACTAAACtctacataaataaaagcattttggCCTCAATGAAACAATTGAATAATGAGAAACTGAGTTTGCCTTCAATTTAGTCTGATTTTTGTTGACATTCTGAGAAAGACATGAGCCGAGCAGCTCTTCTTTGAGTTTCACTGATGTTTGTTCATCGGTGAGCCCAAATGAGATGTCTGTGCCCTGGAGAAACCTTTCAGTGATGTTCGTACAGGGTGAGGTAGTAGGTTGTGTGGTTTCAGGGTCGTGATTTTGCCCCATCAGGAGATAACTATACAACCTACTGCCTTCCCTGAAGGGCAGCAATACGTCACTGGATACCAACGACAAGATGGCGCCAAGCtagtggaggtttttttttcctagtcggTCTGTCAAATTTTGCAACGTGACCTGAAGAgcaataataaagataaatatataactaCATGTGATGtgtctgttgattttttttatacaaaatactTGTTTAAGTTCTGTACTACTGTTGTTCTTGGATGAAATTGTTATTCTTACTATAACCTATGGGACCAGGACATCAGCAAAAATATCCAACACTGTTTCCCCAGAACGTCCATTGTGTAGCCCTGGAGCAGCTGGTTCTGTAACTAAAGCCATTATCCAGTGTTAAGAGAGCAGTTACATGGCTGCAGGCTGGCCAGCCTTTGACTGGTACAGAATTTATAGACGCTGGCGGGCACCTAGGGAGACACGCAGAGACTGGCACACACAAGAGAACAGACGGAGGggcagacaggaagtgatggcGCTGACATGGTATTGCATGATGGGGATGATAGGCTGATATCAGTATTCTT
>XR_003403325.2
tatttggctttttttttttaactatggAACAAATCAGCATGACAGACACACAACACTGAAACTTTCAGAGACTTAATTTAGCACAAACTTCCTGGAGTACTACCTCACACTGAAAGTCAGCTTTTTATTATGAGGAGagACATGCTATCAGGCGGCTATGGGCTGCTACACGTCCCTGTTCGCCTTATTCTCGGCTCATTCACGTGTTTTCGGTGCCACGGCGGACTGAAGGAGCCCGTGAGTGCGCGAGCACCGCTGCATCTCCCCGAGCAGCTCGTGCAGCAGCAGTGTGCAGCAGTGTGCAATGCCGGACATGCCTTAGAATTTCGGGAAATAGCTTGTCTAGCTGTACACAGGCTCTTGTGTAACGGGTTGCTGTGAATCCCACTCCACTTCGCTTCACCTTAGTTGAACTTGGGTGATCTAGTTCAGCAGGCGCGTGAACGCTGTCAGGCCGGTGTGTCGGGTGCCGcgaggaggaaaagaagaacaacaacaacaacacgaaaaagaagaagaagaagaaaagctgtcattataataataataataataataatcataataataattatgattattatgattacgCCAGAATCCTTAAAAGGGACAATCTCTcgacgtatatatatatatatatgtcgtaggcatatttttctttctttcttttttagctCCTAACACCGAGGGACGCCCCGGCTCGCGCTGCTTTTTCGCTTCGCTCGCGCTCGCGCTCGTCTCCGTCGTTGCCGAGGAGCTCGCGCTCAACAAAAGTAACCGGGACGACTGGAATTCGCCATGGAGAAGAATGACAGCTCTCCACCGCCCGGACAGCGCGAGCTCaccgtctcttcttctcttctcttctcttctctttgctcttaaacttgaacttgaacttgagctCCACCACCGGCCCCGTCGCCGCCTAAACGTCGTCTCCGTGTCCgtgtAATGAGGAAGATTTGGTAGATGAGGTACTTATCCATGGCATCATGATACAGAGGCTGACCCTAGAGTTCACAGCTGTAATTGAGAAGTCTTGCAGACACGTGCTTGTGGGGCCCCAGGAGAGACCACCACCGCAGCGGAGCCGGGGAGCGaaaggtgtattttttttccccctttttattttaacctaattatacaaaatattctATAGCACAAAGTATTGATAATGCTTGCACCTTGATCTTGAACATtgagtgttaaataaaaagGGAGTTCAGGTTTTATGgatgccattttgaatttttattgcCCTCAATGGTCCTCGCTGTATGTCTGGATCCATATTTATTtccattgtttttattttctgtgatgTGCAATATTTAATCACAGCAGAATTTAAACACAGCAGAGCAGGCTCTGTTAAAGGCTTAATAATACCATGCTTGAACTGGCCACTGATTGCAGGTCCATgctttcctctctcctcctttaTACCAGACTTCTGCTCTAATATTAGAAATCTAGATGGTTAAGATCACTTTGAGCCAACAATAAAGATTCAAGTTCTTTTa
>XR_003403326.2
tatttggctttttttttttaactatggAACAAATCAGCATGACAGACACACAACACTGAAACTTTCAGAGACTTAATTTAGCACAAACTTCCTGGAGTACTACCTCACACTGAAAGTCAGCTTTTTATTATGAGGAGagACATGCTATCAGGCGGCTATGGGCTGCTACACGTCCCTGTTCGCCTTATTCTCGGCTCATTCACGTGTTTTCGGTGCCACGGCGGACTGAAGGAGCCCGTGAGTGCGCGAGCACCGCTGCATCTCCCCGAGCAGCTCGTGCAGCAGCAGTGTGCAGCAGTGTGCAATGCCGGACATGCCTTAGAATTTCGGGAAATAGCTTGTCTAGCTGTACACAGGCTCTTGTGTAACGGGTTGCTGTGAATCCCACTCCACTTCGCTTCACCTTAGTTGAACTTGGGTGATCTAGTTCAGCAGGCGCGTGAACGCTGTCAGGCCGGTGTGTCGGGTGCCGcgaggaggaaaagaagaacaacaacaacaacacgaaaaagaagaagaagaagaaaagctgtcattataataataataataataataatcataataataattatgattattatgattacgCCAGAATCCTTAAAAGGGACAATCTCTcgacgtatatatatatatatatgtcgtaggcatatttttctttctttcttttttagctCCTAACACCGAGGGACGCCCCGGCTCGCGCTGCTTTTTCGCTTCGCTCGCGCTCGCGCTCGTCTCCGTCGTTGCCGAGGAGCTCGCGCTCAACAAAAGTAACCGGGACGACTGGAATTCGCCATGGAGAAGAATGACAGCTCTCCACCGCCCGGACAGCGCGAGCTCaccgtctcttcttctcttctcttctcttctctttgctcttaaacttgaacttgaacttgagctCCACCACCGGCCCCGTCGCCGCCTAAACGTCGTCTCCGTGTCCgtgtAATGAGGAAGATTTGGTAGATGAGGTACTTATCCATGGCATCATGATACAGAGGCTGACCCTAGAGTTCACAGCTGTAATTGAGAAGTCTTGCAGACACGTGCTTGTGGGGCCCCAGGAGAGACCACCACCGCAGCGGAGCCGGGGAGCGaaagGCCTTCAGGACCAGTCTGTATAGCCTCAGTCTACCcacattttcctcttttgtGAGATGGccaagttaattttttttttacatagaacCACGTCCCATGGAACTCCTCATGAAACAGAGCTGGGTATTCAGGTGGTATTATTAATACACACTTcatgtctgcatgtgtgttctCAAGATATAGTGCCTAATAATCATCATTCATTACTCTGTACTGAATTGCGGGAATGAATTGTTTGTGAGCTGAGGTACGGGAATCGTCAGTCCTGTTGCAGAGAGACACTGTCCTTTGGGGTGAGGTAGTAGGTTGTATAGTTTTAGGGTTGAGCCCTTGCTGTCAGAtaactatacaacttactgtcTTTCCTGAAGTGGCCGTAATGTCATCGATCAAGAGCTGCACGACCAGTGAAGCACATCAACACAGATGCTTTTAAGGATTTACTAGACTCCATGTGATAGTAGCTAAAGACTGCTACACAGAAGAGTgtaaaagtttgtgcccccatCGATTCCGggtggaaaaaagggaaaatgatGCATAGAAATGTTGGGTGTATTATGAAACAAGACAAGAATCTGAAACGTAAGGCAAAAtgagcaatatatatatatatatatatatttgcccTGATCTTGACCTGATCtgaagaaggaaggaagcatAAAAGGAAAAGCATGGACATACAAGTTATTAGAAATAATTTACATGATATTCAGAAAGAGGGATGCAAACATTTGAACTTATATATTGACCATTTTCATTACATGTGATAATGAAGTAATCATTGTGAAACCTAACACATAAAAAGTCTTGTTGCTATAAATCGAATGTCTtcattttgtcttcttttttcttcaagCAAAGGCAAACTTTTGTACTAAACtctacataaataaaagcattttggCCTCAATGAAACAATTGAATAATGAGAAACTGAGTTTGCCTTCAATTTAGTCTGATTTTTGTTGACATTCTGAGAAAGACATGAGCCGAGCAGCTCTTCTTTGAGTTTCACTGATGTTTGTTCATCGGTGAGCCCAAATGAGATGTCTGTGCCCTGGAGAAACCTTTCAGTGATGTTCGTACAGGGTGAGGTAGTAGGTTGTGTGGTTTCAGGGTCGTGATTTTGCCCCATCAGGAGATAACTATACAACCTACTGCCTTCCCTGAAGGGCAGCAATACGTCACTGGATACCAACGACAAGATGGCGCCAAGCtagtggaggtttttttttcctagtcggTCTGTCAAATTTTGCAACGTGACCTGAAGAgcaataataaagataaatatataactaCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU337891 False 1323 lncRNA 0.40 2 19356560 19357907
XR_003403325.2 False 1526 lncRNA 0.45 4 19369327 19385863
XR_003403326.2 True 2416 lncRNA 0.44 6 19356974 19385863

Neighbor

gene id symbol gene type direction distance location
pparaa ppara coding downstream 1422 19335661 ~ 19355138 (-)
mcm10 mcm10 coding downstream 21320 19314613 ~ 19335240 (-)
LOC113531838 NA coding downstream 72061 19283150 ~ 19284499 (-)
LOC117599574 NA coding downstream 83866 19271595 ~ 19272694 (-)
LOC117599464 NA coding downstream 94516 19260713 ~ 19262044 (-)
atxn10 atxn10 coding upstream 25967 19411830 ~ 19428263 (-)
def6c LOC108279918 coding upstream 47023 19432886 ~ 19444451 (-)
cbll1 cbll1,LOC108438797 coding upstream 130491 19516354 ~ 19519608 (-)
cfap54 cfap54 coding upstream 247559 19633422 ~ 19664949 (-)
mcat mcat,LOC107553884,LOC106609558,LOC107732994 coding upstream 285662 19671525 ~ 19676383 (-)
G285245 NA non-coding downstream 65754 19288591 ~ 19290806 (-)
G284885 mdfic,LOC107095313,LOC106906624,LOC106523521 non-coding downstream 418465 18868057 ~ 18938095 (-)
LOC117599567 NA non-coding downstream 433663 18918396 ~ 18922897 (-)
G284882 NA non-coding downstream 494408 18861845 ~ 18862152 (-)
G284866 NA non-coding downstream 525421 18830925 ~ 18831139 (-)
G285287 NA non-coding upstream 19216 19405079 ~ 19405317 (-)
G285288 wnt7b,LOC107388424,LOC107549584,LOC108429451,LOC103028473 non-coding upstream 20040 19405903 ~ 19406128 (-)
G285289 wnt7b,wnt7ba,LOC107725526,LOC107664847 non-coding upstream 22407 19408270 ~ 19408805 (-)
LOC117599445 NA non-coding upstream 43307 19429170 ~ 19430559 (-)
G285331 NA non-coding upstream 174549 19560412 ~ 19560619 (-)
LOC113532190 NA other downstream 608727 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 1144167 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 1144856 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 1264016 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 1265938 18090551 ~ 18090622 (-)
rap1b rap1b,LOC106576640,LOC107695907 other upstream 292420 19678283 ~ 19735232 (-)
G285607 NA other upstream 927204 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 2074963 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 3100373 22486236 ~ 22489467 (-)

Expression


Co-expression Network