G285287


Basic Information

Item Value
gene id G285287
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19405079 ~ 19405317 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU337928
GTTTGTACTTCTCATAACCGAGGCTTTAATTCTAGCTCAATGATTGGAGTAAGCTCTTTATACTGAAAGAAGGCCCAGCTGAGTCCACAGTGTATACAATCAGAcgtatatatacataatacgATGTAAGGAGAACAATGTTATATCATTTAATAATGTGGTGCTCCAAGCTTAACATAATAATGACCACTTCTGAAACAGTATCCCTGCACTCTCGTCTTATTTAAACCTCAAGTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU337928 True 239 lncRNA 0.37 1 19405079 19405317

Neighbor

gene id symbol gene type direction distance location
pparaa ppara coding downstream 49941 19335661 ~ 19355138 (-)
mcm10 mcm10 coding downstream 69839 19314613 ~ 19335240 (-)
LOC113531838 NA coding downstream 120580 19283150 ~ 19284499 (-)
LOC117599574 NA coding downstream 132385 19271595 ~ 19272694 (-)
LOC117599464 NA coding downstream 143035 19260713 ~ 19262044 (-)
atxn10 atxn10 coding upstream 6513 19411830 ~ 19428263 (-)
def6c LOC108279918 coding upstream 27569 19432886 ~ 19444451 (-)
cbll1 cbll1,LOC108438797 coding upstream 111037 19516354 ~ 19519608 (-)
cfap54 cfap54 coding upstream 228105 19633422 ~ 19664949 (-)
mcat mcat,LOC107553884,LOC106609558,LOC107732994 coding upstream 266208 19671525 ~ 19676383 (-)
LOC113532309 NA non-coding downstream 19216 19356560 ~ 19385863 (-)
G285245 NA non-coding downstream 114273 19288591 ~ 19290806 (-)
G284885 mdfic,LOC107095313,LOC106906624,LOC106523521 non-coding downstream 466984 18868057 ~ 18938095 (-)
LOC117599567 NA non-coding downstream 482182 18918396 ~ 18922897 (-)
G284882 NA non-coding downstream 542927 18861845 ~ 18862152 (-)
G285288 wnt7b,LOC107388424,LOC107549584,LOC108429451,LOC103028473 non-coding upstream 586 19405903 ~ 19406128 (-)
G285289 wnt7b,wnt7ba,LOC107725526,LOC107664847 non-coding upstream 2953 19408270 ~ 19408805 (-)
LOC117599445 NA non-coding upstream 23853 19429170 ~ 19430559 (-)
G285331 NA non-coding upstream 155095 19560412 ~ 19560619 (-)
LOC113532316 NA non-coding upstream 175537 19580854 ~ 19588244 (-)
LOC113532190 NA other downstream 657246 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 1192686 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 1193375 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 1312535 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 1314457 18090551 ~ 18090622 (-)
rap1b rap1b,LOC106576640,LOC107695907 other upstream 272966 19678283 ~ 19735232 (-)
G285607 NA other upstream 907750 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 2055509 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 3080919 22486236 ~ 22489467 (-)

Expression


Co-expression Network