G285289 (wnt7b,wnt7ba,LOC107725526,LOC107664847)


Basic Information

Item Value
gene id G285289
gene name wnt7b,wnt7ba,LOC107725526,LOC107664847
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19408270 ~ 19408805 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU337930
CAatagtgtgtatgtggtgttttttttgttttttttttaaaaagacattatCACTAAAATCAACTTTCTGTCTATTACCTTTCTGCCTGCCTCGTTGTTGTGCAGGTTCATGAGTCTGcgggcattttttttaatctcacgAGCGTCCACAAAGCGACGGGAGAACTCAACGCCATACTTGACGTCGGCTGAACATCCACCCCATTTCCAGCCCTCCTCTTGGTTCTGGTAGCCCTGTTTCTCCCTGTCACAGCCGCAGTGGCTCAGGTTGCCCTGACTGCAGGCTGCCGTGACTGCATGGGCCACTCCAGCTGCCGTGATGGCGTAGGTAAACGCTGCCTCCTTGCTGCCTAGGGAGAGGAAAGAGACAGATGCCTGTCATATTTGGCTAAAGGAGTATTGCAGTGCAATgagaaatgagttctcactttgattatcagcagccacatcagtctctgtcttaTCACCTGAGATAAAAGTCACATGCCACATTTAAACAGGAGACTCATTAAGGTGACTTGgctagaaagtttttt

Function

symbol description
wnt7ba Predicted to enable cytokine activity and frizzled binding activity. Predicted to be involved in several processes, including canonical Wnt signaling pathway; neuron differentiation; and positive regulation of JNK cascade. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in several structures, including brain; midbrain neural rod; presumptive diencephalon; presumptive telencephalon; and swim bladder. Orthologous to human WNT7B (Wnt family member 7B).
wnt7b Enables receptor ligand activity. Involved in several processes, including cellular response to retinoic acid; fibroblast proliferation; and nervous system development. Predicted to be located in cell surface. Predicted to be active in extracellular space. Biomarker of breast cancer; breast fibroadenoma; and urinary bladder cancer.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU337930 True 536 lncRNA 0.47 1 19408270 19408805

Neighbor

gene id symbol gene type direction distance location
pparaa ppara coding downstream 53132 19335661 ~ 19355138 (-)
mcm10 mcm10 coding downstream 73030 19314613 ~ 19335240 (-)
LOC113531838 NA coding downstream 123771 19283150 ~ 19284499 (-)
LOC117599574 NA coding downstream 135576 19271595 ~ 19272694 (-)
LOC117599464 NA coding downstream 146226 19260713 ~ 19262044 (-)
atxn10 atxn10 coding upstream 3025 19411830 ~ 19428263 (-)
def6c LOC108279918 coding upstream 24081 19432886 ~ 19444451 (-)
cbll1 cbll1,LOC108438797 coding upstream 107549 19516354 ~ 19519608 (-)
cfap54 cfap54 coding upstream 224617 19633422 ~ 19664949 (-)
mcat mcat,LOC107553884,LOC106609558,LOC107732994 coding upstream 262720 19671525 ~ 19676383 (-)
G285288 wnt7b,LOC107388424,LOC107549584,LOC108429451,LOC103028473 non-coding downstream 2142 19405903 ~ 19406128 (-)
G285287 NA non-coding downstream 2953 19405079 ~ 19405317 (-)
LOC113532309 NA non-coding downstream 22407 19356560 ~ 19385863 (-)
G285245 NA non-coding downstream 117464 19288591 ~ 19290806 (-)
G284885 mdfic,LOC107095313,LOC106906624,LOC106523521 non-coding downstream 470175 18868057 ~ 18938095 (-)
LOC117599445 NA non-coding upstream 20365 19429170 ~ 19430559 (-)
G285331 NA non-coding upstream 151607 19560412 ~ 19560619 (-)
LOC113532316 NA non-coding upstream 172049 19580854 ~ 19588244 (-)
G285361 NA non-coding upstream 268035 19676840 ~ 19677595 (-)
G285362 NA non-coding upstream 302092 19710897 ~ 19719135 (-)
LOC113532190 NA other downstream 660437 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 1195877 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 1196566 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 1315726 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 1317648 18090551 ~ 18090622 (-)
rap1b rap1b,LOC106576640,LOC107695907 other upstream 269478 19678283 ~ 19735232 (-)
G285607 NA other upstream 904262 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 2052021 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 3077431 22486236 ~ 22489467 (-)

Expression


Co-expression Network