rap1b (rap1b,LOC106576640,LOC107695907)


Basic Information

Item Value
gene id rap1b
gene name rap1b,LOC106576640,LOC107695907
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19678283 ~ 19735232 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU338029
TGCTTACAGGGAATCAGTACCAACTTACAAAAATGATGAGCAAacttgtaatgatttataacaaTGGGCTTCATCAAATAATCATCAGTAATATCAGTGTCTGCACTGCGTTTACTGATGTTCTCTAAAGGTAATTCACCCCGAACCTTCCTCTTGCCTGCGAATGCAACTGATCATTTTGGATCCTGTcagtaaagattaaaaaaaaaaacttgcctGTTAGTGACTGTTTCACTTTTGTAAAACTTGGATTGAACTGTTTTCTGTCTGCGTTCCTGTGGGAATTACTGTAGTGAATGTTGGGGTGGGGATGCTGTGTTTCTGAGCGGGGAGAAAAGGGATCaatagttacaaaaaaaaaaaaaaagaccatatTGTAACAAGTGCAATCATATGAAGCATTCATAAAGCATTCATGAGATGTGGATGAACTGTGCGGCACAACGACACAAAATGTTCGACTAGTTGAGCTGCAGACCATCTTATAGTCTGCAACTAAAATTCATGCTTTTTGACTCAATATACTGTAACAATGTATGTGCACCATGGATGCTTTATGCATGCATTATGGAGGTTcactcagtaaaaaaaatgtgataaataaaaaaatctatcaagTAATGCTGAATGAGTGATGAAGGTTAACATTGAGGTTATGTTCTGCTGATTGTGTCAACAAATGCTTTGttggatttctgttttttaaaagaaaaaaaaaatctgggtgAGGGTGAACGCGTGAGAGCGCTGCagtatttgaaatgaagcatttGAGT
>XM_026923046.2
ggggaaacagagagagagagagagggagagactggCTGACTGGTTGAGTGACTGACTggctgactgagagagagagagagagtgagagagggagagagagagagcaaacgGATTGGAGCTAATCTgtgatTGACGGAGACACTGCATGATGCGTGAATACAAGTTAGTAGTCCTTGGCTCTGGTGGTGTCGGCAAGTCTGCACTGACTGTTCAGTTTGTTCAGGGGATCTTTGTGGAGAAGTATGACCCCACAATAGAAGACTCATATAGAAAGCAAGTGGAGGTGGATGGCCAGCAGTGTATGCTGGAGATCCTGGACACTGCAGGGACGGAACAATTCACAGCCATGAGGGACCTGTACATGAAGAACGGCCAGGGCTTCGCACTAGTATACTCCATAACTGCACAGTCCACATTCAATGACCTGCAGGACTTGAGAGAACAGATCCTGCGAGTTAAAGACACTGATGatGTGCCGATGATCCTGGTGGGGAATAAGTGTGATCTGGAGGATGAGAGAGTGGTGGGGAAGGAGCAGGGACAGAACCTGGCCCGCCAGTGGAACTGCTGTGCCTTCCTCGAGTCCTCCGCAAAGTCCAAGATTAACGTCAATGAGATCTTCTATGACCTGGTCCGGCAAATCAACAGGAAAACCCCAGTACCTGGGAAGGCACGCAAAAAGTCCAACTGTCAGCTGCTCTAATACACAGCTGTTCTGTTGCTCTGAGCCAGGTCTGATTTGCTGCTGTGTCTGTCAGCAGTGCCAGCATTCCGACGTTACTAAAACCTAACATCGAATGGACTTTCCTGTGTGGTGATGCCCCTTTAAAGAAACCAACCGACAGATTCAAGGCTACAGTATCATATTTTTTGCACATAGATAACCATCAACACTTTCCAGAGTTGCAAGAAAGATTtttacttataaatatataaatatatattctaaCTGTATGCAACTAAAATAGACCAATAATTAcatggataaatgaataaaatcctaaaagaattttaaaaaaacgcAGAGCCTACACACAGTGTTATTGCTAACGGAGTCAGCCACCGTTGGAAAAGTAAGGAGCGTGTGTTGAACCTGACTGTGCACGTTGCCATGGCAATTACAATGATGCGATATTTATAAGCACCACTATTTTAGCCAGAGATGAGAGGAAGTCCAAAGACACCCATATAGTCCATTTCGTACAGCTAACTTTGCTCCTTGGTTTCTGTGCATTTCTTCCTGTAGATTTTGtcttttgtaacatttttttgtttgttttattttcatcctAATTTTCCTCCTTCctgcattttcactttttaaaagttACTAGTTTTCGCTCTGCCAAGATGGTATATCACATGAACTATTGATATAAGTTTTATCTTTAGGAAAACCTGTGGATACATGtatgtgtaaaaattaaaaaatataatgatttCTGTCACTATTATGTTGTTCTTAGCCTCAAATGCCTTCAAATATGtatttagatctttttttttctttccaggcGAAtccaacttaaaaaaaacaacaaaaaaaaacttaatccATCTCTCATACCAGGTTTCTTGTCTTGTTTACGGAGACATTTGTACAGTTTGGGGTGCTCACAAGGGGGCACTGTTGAAAGGGACAGTCATGCTTCACCTTGAAAGagtgaaatataataaatcagCTTTGCATCATGTGATCTCTCATTGATAGAATATAAACTGTCCAATCCCTTTCACAGAATTCCCCTTAACTACTACaggaagtatattttaaagaattgagagcaacactttctatgaagcccatatttgtaaattattataaCTGTGCTTCTGATTGTTTATAAGTAGGTAATGATTTCTTGTAAGTCtttttataaactctaataatgcCTTGTGAAGCTgtaataatgtgcaataaatagCTCCTTGATAACTTACAGACATGTTGTAACTCAAGTGCTGTTATTCTTTATAATGTCATGTGGTGTACTGCGCAGCCTTTATAACTAAAGATTATCTGTGAATATTTAAAGCAactgtaacatttattaacaattatttaaaaaaaaaaaaactgtcttgcTACTTAGGAGGAATAATTTAACATTCACTTTAATTGAAGCACTGAGTAATGACATTTTAAgtgtttatcattttataaataattgttaataaatagtaattaatataaataataataaataattagttaCTCACAGGTCATTACTAGTAAAAAAGGTTGTGCAGTACACCACATGGAATTATAATGCATAGCCACTCTTGTGTTATGatgattatgaatatgattATAAATTCACAAGGAATTACTTATAGAACATTATTAGAGCTTTACAGGGCATTGTTAGAGTTTATACAAATGCTTACAGGGAATCAGTACCAACTTACAAAAATGATGAGCAAacttgtaatgatttataacaaTGGGCTTCATCAAATAATCATCAGTAATATCAGTGTCTGCACTGCGTTTACTGATGTTCTCTAAAGGTAATTCACCCCGAACCTTCCTCTTGCCTGCGAATGCAACTGATCATTTTGGATCCTGTcagtaaagattaaaaaaaaaaacttgcctGTTAGTGACTGTTTCACTTTTGTAAAACTTGGATTGAACTGTTTTCTGTCTGCGTTCCTGTGGGAATTACTGTAGTGAATGTTGGGGTGGGGATGCTGTGTTTCTGAGCGGGGAGAAAAGGGATCaatagttacaaaaaaaaaaaaaaagaccatatTGTAACAAGTGCAATCATATGAAGCATTCATAAAGCATTCATGAGATGTGGATGAACTGTGCGGCACAACGACACAAAATGTTCGACTAGTTGAGCTGCAGACCATCTTATAGTCTGCAACTAAAATTCATGCTTTTTGACTCAATATACTGTAACAATGTATGTGCACCATGGATGCTTTATGCATGCATTATGGAGGTTcactcagtaaaaaaaatgtgataaataaaaaaatctatcaagTAATGCTGAATGAGTGATGAAGGTTAACATTGAGGTTATGTTCTGCTGATTGTGTCAACAAATGCTTTGttggatttctgttttttaaaagaaaaaaaaaatctgggtgAGGGTGAACGCGTGAGAGCGCTGCagtatttgaaatgaagcatttGAGTAACTGTAGAGTTGGGGAGGAGGGTGGGAGGGTGGATGGGTGGCCAAATGTAAACTTAAAAGCCTTAATTGAAGTGGTGCAATTTTGTATAATCGAGCATCTGTAGTTCAATAAATTGGATTGCCATGCAAGGGCTCGCAAGAAGCCAGTTCTGCCACTTGATTGTGTATTGTTTCACAGTTCTTCTGTCAATAAAATCAGTTTAACATTTGCTCTAA
>XM_026923047.2
ggggaaacagagagagagagagagggagagactggCTGACTGGTTGAGTGACTGACTggctgactgagagagagagagagagtgagagagggagagagagagagcaaacgGATTGGAGCTAATCTgtgatTGACGGAGACACTGCATGATGCGTGAATACAAGTTAGTAGTCCTTGGCTCTGGTGGTGTCGGCAAGTCTGCACTGACTGTTCAGTTTGTTCAGGGGATCTTTGTGGAGAAGTATGACCCCACAATAGAAGACTCATATAGAAAGCAAGTGGAGGTGGATGGCCAGCAGTGTATGCTGGAGATCCTGGACACTGCAGGGACGGAACAATTCACAGCCATGAGGGACCTGTACATGAAGAACGGCCAGGGCTTCGCACTAGTATACTCCATAACTGCACAGTCCACATTCAATGACCTGCAGGACTTGAGAGAACAGATCCTGCGAGTTAAAGACACTGATGatGTGCCGATGATCCTGGTGGGGAATAAGTGTGATCTGGAGGATGAGAGAGTGGTGGGGAAGGAGCAGGGACAGAACCTGGCCCGCCAGTGGAACTGCTGTGCCTTCCTCGAGTCCTCCGCAAAGTCCAAGATTAACGTCAATGAGATCTTCTATGACCTGGTCCGGCAAATCAACAGGAAAACCCCAGTACCTGGGAAGGCACGCAAAAAGTCCAACTGTCAGCTGCTCTAATACACAGCTGTTCTGTTGCTCTGAGCCAGgcGAAtccaacttaaaaaaaacaacaaaaaaaaacttaatccATCTCTCATACCAGGTTTCTTGTCTTGTTTACGGAGACATTTGTACAGTTTGGGGTGCTCACAAGGGGGCACTGTTGAAAGGGACAGTCATGCTTCACCTTGAAAGagtgaaatataataaatcagCTTTGCATCATGTGATCTCTCATTGATAGAATATAAACTGTCCAATCCCTTTCACAGAATTCCCCTTAACTACTACaggaagtatattttaaagaattgagagcaacactttctatgaagcccatatttgtaaattattataaCTGTGCTTCTGATTGTTTATAAGTAGGTAATGATTTCTTGTAAGTCtttttataaactctaataatgcCTTGTGAAGCTgtaataatgtgcaataaatagCTCCTTGATAACTTACAGACATGTTGTAACTCAAGTGCTGTTATTCTTTATAATGTCATGTGGTGTACTGCGCAGCCTTTATAACTAAAGATTATCTGTGAATATTTAAAGCAactgtaacatttattaacaattatttaaaaaaaaaaaaactgtcttgcTACTTAGGAGGAATAATTTAACATTCACTTTAATTGAAGCACTGAGTAATGACATTTTAAgtgtttatcattttataaataattgttaataaatagtaattaatataaataataataaataattagttaCTCACAGGTCATTACTAGTAAAAAAGGTTGTGCAGTACACCACATGGAATTATAATGCATAGCCACTCTTGTGTTATGatgattatgaatatgattATAAATTCACAAGGAATTACTTATAGAACATTATTAGAGCTTTACAGGGCATTGTTAGAGTTTATACAAATGCTTACAGGGAATCAGTACCAACTTACAAAAATGATGAGCAAacttgtaatgatttataacaaTGGGCTTCATCAAATAATCATCAGTAATATCAGTGTCTGCACTGCGTTTACTGATGTTCTCTAAAGGTAATTCACCCCGAACCTTCCTCTTGCCTGCGAATGCAACTGATCATTTTGGATCCTGTcagtaaagattaaaaaaaaaaacttgcctGTTAGTGACTGTTTCACTTTTGTAAAACTTGGATTGAACTGTTTTCTGTCTGCGTTCCTGTGGGAATTACTGTAGTGAATGTTGGGGTGGGGATGCTGTGTTTCTGAGCGGGGAGAAAAGGGATCaatagttacaaaaaaaaaaaaaaagaccatatTGTAACAAGTGCAATCATATGAAGCATTCATAAAGCATTCATGAGATGTGGATGAACTGTGCGGCACAACGACACAAAATGTTCGACTAGTTGAGCTGCAGACCATCTTATAGTCTGCAACTAAAATTCATGCTTTTTGACTCAATATACTGTAACAATGTATGTGCACCATGGATGCTTTATGCATGCATTATGGAGGTTcactcagtaaaaaaaatgtgataaataaaaaaatctatcaagTAATGCTGAATGAGTGATGAAGGTTAACATTGAGGTTATGTTCTGCTGATTGTGTCAACAAATGCTTTGttggatttctgttttttaaaagaaaaaaaaaatctgggtgAGGGTGAACGCGTGAGAGCGCTGCagtatttgaaatgaagcatttGAGTAACTGTAGAGTTGGGGAGGAGGGTGGGAGGGTGGATGGGTGGCCAAATGTAAACTTAAAAGCCTTAATTGAAGTGGTGCAATTTTGTATAATCGAGCATCTGTAGTTCAATAAATTGGATTGCCATGCAAGGGCTCGCAAGAAGCCAGTTCTGCCACTTGATTGTGTATTGTTTCACAGTTCTTCTGTCAATAAAATCAGTTTAACATTTGCTCTAA

Function

symbol description
rap1b Enables MAP kinase kinase activity. Acts upstream of with a positive effect on hematopoietic stem cell differentiation. Acts upstream of or within chordate embryonic development; convergent extension; and heart development. Located in cell-cell junction. Is expressed in several structures, including brain; cardiovascular system; floor plate; hindbrain neural plate; and mesoderm. Orthologous to human RAP1B (RAP1B, member of RAS oncogene family).

NR:

description
Ras-related protein Rap-1b precursor

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0060026 convergent extension biological_process
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005911 cell-cell junction cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07836 RAP1B; Ras-related protein Rap-1B

RNA

RNA id representative length rna type GC content exon number start site end site
TU338029 False 776 lncRNA 0.37 1 19678500 19679275
XM_026923046.2 True 3374 mRNA 0.38 8 19678283 19735232
XM_026923047.2 False 2592 mRNA 0.39 8 19678283 19735232

Neighbor

gene id symbol gene type direction distance location
mcat mcat,LOC107553884,LOC106609558,LOC107732994 coding downstream 1900 19671525 ~ 19676383 (-)
cfap54 cfap54 coding downstream 13334 19633422 ~ 19664949 (-)
cbll1 cbll1,LOC108438797 coding downstream 158675 19516354 ~ 19519608 (-)
def6c LOC108279918 coding downstream 233832 19432886 ~ 19444451 (-)
atxn10 atxn10 coding downstream 250020 19411830 ~ 19428263 (-)
dyrk2 dyrk2,LOC107757277,LOC107694272 coding upstream 124269 19859501 ~ 19868173 (-)
si:dkey-39a18.1 LOC108279454 coding upstream 156680 19891912 ~ 19896958 (-)
cand1 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding upstream 163028 19898260 ~ 19922472 (-)
wif1 wif1,LOC107655595 coding upstream 507676 20242908 ~ 20256547 (-)
trnaa-ugc_16 NA coding upstream 687169 20422401 ~ 20422472 (-)
G285361 NA non-coding downstream 688 19676840 ~ 19677595 (-)
LOC113532316 NA non-coding downstream 90039 19580854 ~ 19588244 (-)
G285331 NA non-coding downstream 117664 19560412 ~ 19560619 (-)
LOC117599445 NA non-coding downstream 247724 19429170 ~ 19430559 (-)
G285289 wnt7b,wnt7ba,LOC107725526,LOC107664847 non-coding downstream 269478 19408270 ~ 19408805 (-)
G285437 NA non-coding upstream 181377 19916609 ~ 19920334 (-)
G285425 NA non-coding upstream 218381 19953613 ~ 19960579 (-)
G285428 NA non-coding upstream 227727 19962959 ~ 19967411 (-)
G285426 NA non-coding upstream 289511 20024743 ~ 20026895 (-)
G285593 NA non-coding upstream 543294 20278526 ~ 20291863 (-)
LOC113532190 NA other downstream 930450 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 1465890 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 1466579 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 1585739 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 1587661 18090551 ~ 18090622 (-)
G285607 NA other upstream 577835 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 1725594 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 2751004 22486236 ~ 22489467 (-)

Expression


Co-expression Network