G285362


Basic Information

Item Value
gene id G285362
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19710897 ~ 19719135 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU338032
CAAAAATgttctcttctgtctcttcGCTCTTCCTCCTCGCTCTTCCTCCTCACTCTCACACCCCAGGGTTCTACATTGACCTATTAAAAAGATCGACCAGTGGTTGTCTTGAGATCGACGTAATGAGCACCCATGGTGTAGGCTTTAGCAAACCTTCAaatagggctgcacaatatatcgaaattatcaaaatatcacaaatgtaaatatcacgATATGCATATCACAAGGGCTtgtgataactgaatgatttaaATTCTTcgaaaagtttaaaaagttaaCGTTTTGGGTGACGCAGagagcagagaatgctttcttttcctcaaaagaacacgAAACATGTATgctggttatgtcattttcattttttaaatgaataaatatataattttaattgattttacacacgtATAGCATTATTGTACTGAGTTATCGCGTATCGtgttttttttcaatatcaTGCAGCCTTATCTTCAAAGtaacaaaaaattaatacatCAATTATCAAAATATACACTAAGTGCAATACGCAGGTGTACCTATTCTTTCACACCTTGCACAAAatttaagaagaaaaattaGAATTGATCTGCGGTTTGGACTGACTGAAAGTTATGCGATAATGACGCCCTTCCCCAAATCTCGAGTATTTAAACCACATGTGAAAACGCCCTTAATGTAGCTCTCAGTGAGCACAGTGCTCGTGCACAGCAAGCCTATCCATACAAACTCTCTGCTCTTTAGagtctgttcttttcttttctgtgcaGTTTTGATATAACtaatctttttccttttctttgagTCAGCATAATTTTGAGACAAGGGAGCTGCCTGTTGATCGATGGGATGTCACTGTGTTTGTGGTTTCCTCTGGGCGTATAGAGTGTAAAAGAGTACATGCGAACTCATCGTGCTCCCAGCTGTGTTACAGAGATGTCATATGACACTGACGCAGACATCTCAGAGAGGGCGTTAGTTGATGATTATTAGGCAGGGCCGTGTGGTTTCCGTTTCTGCAAGGTGGCCTAAGGCATGGCGAGTGCCTCAGGCCCTAATCTCTACCAGAACCAGCTTCCTGTCTCCTTGTGTCAGAAGTCAGACGAGGCCCCTCTACAGGCCATGCAGTCGGTTTTCTCCAGGTTGGACGTAGCCTCAATATCCTGCCAAGTTTATTGAGAATATTATGAtattggacttttttttatgttttattttccagtACAACTTCAATATATCCATCAAGGACAGGTACCATtcagttttctgacatttttcatttaaaaaataaatgaaaatatgacaTTCTGTAGAAGAATACAGATCAATCAAAatgaagtattattattatttttagatttttttttcttgtaactttaattttaagaaaaatctcAAAAGAAAGCCAATCTGTCTTAACTTTACagtgaaacagagaaaaagaacatCCAGATTAACCTTAATGTAAGTCTTAAGCGCAAACTGTAGTGTCTTCACATTGGAAATGAGCAAATATCTTTACTCACCACATAGTAGTTCTTAATAATATGTTCATAATCATCCAGAATCTTATCTGATAATCTGTAGAAACATTGTAGACTGTCATAACTGACTCAGCATTGCTCAGAGTCATGATCCAGTGGCAGCAGGTTTCCTGTTCGGGGTATTAGTTTTTCTTATTCATAGTTGCCCAGCTGGCAAGTAGATTCAAcagccagaaaaagaaaaaaaaatcctactccTAAACTTAATGTGTTATACACCATAATGTGTGCCGCTGTAATGCACACATTGGGATGACTGTAGAGCGATTTTTAGTAGGaggattaattagcatgcacgAATTGTATGCGGAAACTCTGATAAACCTGAGCAAGATAAAGTCCAGTGCAAACCTGTCACGTACTACAACTCTATACACtgctataaataaatcaccTTGTGGTTAAACATGTCAGGGGAAAATGAAGATGCTAGCTAGTCTCAGATACCTTTTACACGCAATTTGTGGACGGAATCTCGCCAAcaatttgttttggtttttttttttgttttttttcctgcatcaCACTTATATTTGGTGTTTCATCAAGGCTACATGATCAAGATAGCGAATCAAAAAATGTTTCTGCATATTTTTCCAGCATGGTACGTCAAGGACAGCCTTCTCAAACTACGATTTCTTGCATGCATATTCATCAAGACCATTCAGAGCAAACCATCCTGTGCCTTGTACAGCAAGGGACTATGTAAATGTAAGTGCGTAGCAGCCACCCAGAGGAACATGGTGCATGTTTTACATGTTGAGCCGGAAGAAACTCAGTTACAGCAATCTAGCTCAGTAGTGATCATATTTCTTGAGTTGCTCATTAGTAAATATAGTGCTTGTGCAGTGTGAGTTGTTTGAGACTGTTATGTAGATGAGTAGCATCTTCTCAACCAGGAGTATAACCTCTTTAATACTGGTGAATGGATTATTCTCTTAGTCTCTTCTCTTTTGCATGTTGTTATTGTCCAAAGATGATCTAAGGCCAGACAATCTCAGGGCTAATGCTGTTCCCCCACTGTTAAACACttggaaaaaatgttttgagCATGTCGTCATTCAGACTTCCTCTCGCCAAAGCGTGGCCAACACCCATGTTCTCATTCATGGAAGACCCTCAAGACAGTCCTATAgtaccatttttctttttgctgttcATGGATTAATAACtgggaaaaaaggaaatcaGAGTGGATAACTACATTCCACCAGCACACTATCATCCTTTCTGACACAAGTGTTAGCAggcctaaaaaaacaaaaccgtAGCAGGTATTGTTGCTCTCCTCTTCAGTGAATGTGTATCTTAGTACATAGGAGGATATTTATCACTCCACACTCGAGCAAGGCGGAGAAGCAGAGCTGAGATTTAAATCTCCAGTGTGCAAAAGTTTCTCAGTTCAGTGCGGACAGTGATTGGGGAGAAGTGTTTAGGTTCTGAGTTGAATATTGGACTTGTGCTGCTTGTCTCATGGGCTTctttatgtgcattttttttttttatactgtgtgGGAGAACTGCAACTGAGCTATTACACTCACACTGTTATAGATAAGTGTAGGCACTGTACAAACAAGGCTTCACCTTTTCTGAAGTTGAAATATTCCAAAACGAgtcattaaaatggaaaatcttTAGCTGTTGATTGGTGTAAACATTAATCCATGTGGGTGGACTGTCGGGGCCAAGTGTGCAGCGACTTTCCACAGGGAATATGTATTTAAGGATACAAATGACTTTAAATGACTTTAGATAAGTGAAGGTCTGTGTTCTGAAGTGAACCTAAACGGCTCCTGTTCAGTTGTATGATGGGAAATAATGTTGTGCCTACGCTAGCTGCTTTAACAGGGTCTCAGAGTCCAGGCCACATGTGGTTTTGGTATGGGTGATGAAGTCAGGCCCCAGAGTGTCTGCAGAAAGGAAAATTTAGCTGCCTGCTGTCTGGGGAATTCACAGGTTTGCTGTGACATGGGCTGACCCTTACTCATTTGTCATTACCAGTGTCCCAAATGCGACACAGTGAATCATTCAAAATCTGGTCCATTGTTTTAAGGTGGCCTTATTCTCTGTTCAGGATGCATAAAGAAATCATCGTGCTGATTTTCTGCTTGCTGTAATAGTTTATTCATCCCTGAAAGCTATACTTCGTCTTACATTTATAATTAGAGAATGACAAATTGAGGTGTGGTGAACTGTGACCCCAGGCCAGCATGCTTCCTTAGCCCTAATGTGACACTATTGTTGATGTAGAATCCTGGGCTGTAACGGTTCATCATTCCTGGTCTTTAATCATGACCTTTTGTAATGTCACACACATTCTTTGGCTAgtatacattttcaaaaactgaaaacttGGCTTTTTCACACCATTCGATATGCGTTTGCACAAATTGGCTAGTTACAAATGTTCTCATTATCTGACATTGAAACTGCCTTGCCATGTGTGTTGgtattaatatgaataataccaaattatcattatcataataataataatgccaaaGTGATCATGTATGTGATCAGCTTATGAGCTGTCCTAGTGTCTTAGTATAGAACGTTGCTCACAAACAATTAATTGCTGGGGCTCACGTCCAATTATTATAGCCTGAGGTCTTATTGTTGGAAAAAATTCTTAAGGAATGCTGCTTTCCCTATcgtttatttcttacataataaGTGGCAGGCTTGTCATTATCTAAGCTCTTTTTCTGCTGACTGCCATTTGTGCTTCCTGGTCCAGTGTTTGTTAGTGTTATCATTGTTGGCCTAACTTGTGTATTACTTGATACGTTATGCCTgtgcatttttcttcatttacttGGAACTAGACAAACCCTGTCTCTATGGACATGCCAAATGGTTATGGGGTTAGGAGCATCATATCTCATTTGTGGCATGAGACTGAGCCGCTGGGTATTGAGAGTCTCCTTGGCCCTTCTTACATGGGCATTATAAAGTGTCACCATTGCaaaacttgtttatttatttatttatttcctggaGAAATGTTATGATATCATAGTAGAAGATGCTAGATGCATTTTGGATGCAACTACTGCAGGTGGGTAATCATAAAGCATGtacaaaggagaaaaaaagaagttctAATGATAagtgatgctgatgatgatgctggTAGAGAGAGTGCATTGTGCAAAGATCAGCTTTAAACACTCGTTTAATAGGTAGAGCATGAAGAGGAGCTAAGACAGGCTGGCTGCATGGAGAGCACTTGATCTTTAGTCAGTGATTAAGGCATAACTTCAAACCCCCTTCCTGCTGTGAGGTCACTTCCTTTACTttccaaccttttttttttttttttttttaacagcttaCTGATCAGCTTTCTCCAATCCTGTTGCTCGTCCTGTTGCCTAGTGACCATGATCGTCTTGCATATTTATTGCAACCCCACCTGGCCTGAGGCAGTGATGGTTTAACAGCTGGCCCTCCCCATTCCTCATTAAAGAGGCGTTCTGCGACTCTGGCACTGCGAACGAGAGGGTCAATAGCACCGGAAAACACCAAGGGGGGTCTTTAAGACCGTGTGGGACTTGGCCTCTGTTGACTTCCTAGCAGCAGGGTCCGCTCTCATCTCCCCGTGCCTAAAGCTTCCATCCTGGTGAGCATCCGCTTTTCTAATTGCTGTCTGGGATCCAGCAAGGACTGCGGGAATAGTGGCTGCTGGATGGAAATGGAAGGGATGATAAAAGTGTAATGGGCTCAGCTGTTGGCCAGTGTGAGAGTGGCAGGGCACTATTGATTGGGAATCAGGGCCGCCGATGGCGTGTCTCGGATTTGTCGGTTGGCTAGAGCAAGCACAGATTGCTAAATGCTATATGGATCCCTCTTTATTTTAGtcagagaagaagaagcagcagcctttatttgtctcacatacattacagcacagtgaaatagTTTTTCGCATATCCCAGTTGTTAGGAatctggggtcagagcgcagggtcagccacgATACGGCTcccctggagcagatagggttaagCTGCttggtgctggggcttgaaccccgaccttctgatcagtaagcCAGAGCCTAAactgttgagccaccactgcaccAATATAGGTCATCCCTGCAACAGTTACATATTATTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU338032 True 5672 lncRNA 0.40 2 19710897 19719135

Neighbor

gene id symbol gene type direction distance location
mcat mcat,LOC107553884,LOC106609558,LOC107732994 coding downstream 34514 19671525 ~ 19676383 (-)
cfap54 cfap54 coding downstream 45948 19633422 ~ 19664949 (-)
cbll1 cbll1,LOC108438797 coding downstream 191289 19516354 ~ 19519608 (-)
def6c LOC108279918 coding downstream 266446 19432886 ~ 19444451 (-)
atxn10 atxn10 coding downstream 282634 19411830 ~ 19428263 (-)
dyrk2 dyrk2,LOC107757277,LOC107694272 coding upstream 140366 19859501 ~ 19868173 (-)
si:dkey-39a18.1 LOC108279454 coding upstream 172777 19891912 ~ 19896958 (-)
cand1 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding upstream 179125 19898260 ~ 19922472 (-)
wif1 wif1,LOC107655595 coding upstream 523773 20242908 ~ 20256547 (-)
trnaa-ugc_16 NA coding upstream 703266 20422401 ~ 20422472 (-)
G285361 NA non-coding downstream 33302 19676840 ~ 19677595 (-)
LOC113532316 NA non-coding downstream 122653 19580854 ~ 19588244 (-)
G285331 NA non-coding downstream 150278 19560412 ~ 19560619 (-)
LOC117599445 NA non-coding downstream 280338 19429170 ~ 19430559 (-)
G285289 wnt7b,wnt7ba,LOC107725526,LOC107664847 non-coding downstream 302092 19408270 ~ 19408805 (-)
G285437 NA non-coding upstream 197474 19916609 ~ 19920334 (-)
G285425 NA non-coding upstream 234478 19953613 ~ 19960579 (-)
G285428 NA non-coding upstream 243824 19962959 ~ 19967411 (-)
G285426 NA non-coding upstream 305608 20024743 ~ 20026895 (-)
G285593 NA non-coding upstream 559391 20278526 ~ 20291863 (-)
LOC113532190 NA other downstream 963064 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 1498504 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 1499193 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 1618353 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 1620275 18090551 ~ 18090622 (-)
G285607 NA other upstream 593932 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 1741691 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 2767101 22486236 ~ 22489467 (-)

Expression


Co-expression Network