G285428


Basic Information

Item Value
gene id G285428
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19962959 ~ 19967411 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU338098
ggaaatatGTTGAAATTATTGTCAGCTGTAATTGCATGTATGCTCCAGCTGCAGCAGCTAGAGGTTAGGCTGAAAACTAACGGAGTATTCCTTCAAATCCAAGAGGCTGAAATGTAACGACCGACTTACCGAACAACCTGCATATGgatttttataattaacatgcaATCATCAGTTGTTTATTCATCTGTAACGAAATTCCGTAGATACGTTGGTTTCtttcattacccacaatgctgtttgatTACCTCCTGATAGTGGTGACAGTGGGATTTCTctctcgcttcatctctacctaaagatagcaatgcagcggcgctttagtctgtccagctctctcacctctccatctgtacactctgctcaaacactctgctcaaaccaatcatatagctgcactgcattctgggtcTTTGAGCCAAATGTTTGTTGTGTGGACTGATTCTACGTtgtatttctcattaatatgacattaagtgttgctggaaaatggtgattGAGAAgaggaaatgtgtgtttatccccaaaatcatacacacatttctcaaacaCATTTTACCATATCACGTTCTTTACATTTAAGTACTTTACACTGTTTTACACaagtggaataaaatgaaaGCCCTAATTTGAAGCGACAATATCAGTCTTAATTCCAGGTGCGGTTTCTATTCTTAATCTCTTGCATTCATTTTTGAGCTTTTTTTGAAATGAATCTAACAGGGAATGCTAGCCAGGAAACGTTTACGGCTTGCATGAAGACTGGCGTTGCCTCAGATTAGCGCTtttgttttgttttttttaccgAATCCAAACTTCTTGATTTTATTCCATGTTTTCAACTAGATGTTGCTAGCTAGATATGATGAATATGAACCGAGTCGTAGATGACAACCTGTTGTTTTGTTCTGGAAGAAAATGGGGATTATACTGACAGTCAAGAAAGTACATCACACTGTGTGGCAACAAGAGGTTACTATATTGTCAAGAAAGGTTCAGCCATAATCAGGAGCAATGGCATGACTTCATTCCTGCGGTCCCTATTTCCCTTTAAGCCGGAGATGGCTCGAAATAAATTAGAGAGCCGACGTGAAGTGGCACACAGAGACATAACCGCACTTCCTCCGTAACCTCTGAAGATAGCTGACCTGCATTCAGCTTCCCCCGCCAGCCTAGAACTTAGCGCCGAATGCTGCATACTAATAACCCCACCCCACTGACCTGCAAAGCCTCATGGACAATCAAAATGCAGGGCAGCCATCACCGATTGATGTGAGGTGAGCACTGGAAACAGATTAATTGGGTGAAATCTGTTTTAAGTTTCACTGCTACAGGGATGGAAGCTAATGGCTTGGCATTTGAGGCCAGCCAACATTTTGATTGATGGGCCACAAAACTGGATTTCTTTTGAATACAGCAGTTTTTGATGAAGCCGTTTTCGAAACCCGAGCGGATGAGTGATGCCACAAAGCTTTCCTTAATTCATGCCGCTTAGAGTAAACACGGGCAACGCGGAGTGAAACGTTGCTCATCTCGTGAGTGAAAATATATGGCTTTACTAACCGGTTTATTTCCATTTGGCCCCTTTACAAGCTTCCTTTCTTGGTGGAGCATTTATCAGTGTGTGAGCCAGGGGAGGCATCAGTCAGTGTTTCCGTCTTGATGAATAATTAGAGGCAGAGCTTTCAGGTCCAGCTTAGTCCCTCGTCAGCTGTCAGGCATAAGTCACTCGAGCTGAGCCGTAAACaaatcagtataaacacacactccaccaccCCCCACGCAGGACCATCCGTCAACAGGAAATAAGGAGTACATGGCACAGTGTAAATGCaatgtacacatgtacacacgcGTGACTAATACGAATATACTCTAGGCTTAATCAGGGACATAATGGAGCCCCATAGCTTCTGGTGCTTGAGTAGCTCGAGTAGCTTGAGTATGCATGTCCGTGTGTACCCATACAAACTAGACGTGCTGAGAAAACGGTCACACTTCAGTGATCCAGAAGCAGAAATGGGCCTGACATCAGCATATCTCAGAGGACTCAAGAGCGACGCATGAACCAGAAGGAGGGGAGGGGGAGAGCAGAGAGCACAGCGCAGTGCAGAGCAGTGTAGTGCAGTGAGAACTAGCAGAGGTCAGCTGACTGTGCAGATGTGCCCCGTTAGCTTTGTTCATTAACGAGCAGAGGTAGCCGCTGTGCGAGTCCATGCAGTGTAATGACAGGAAACAACGTGCAGCTTCCGTATGAGCAGCTAAAAAAATGGCCAGAGACCTGGCGTTAATGAGTTACCTACAGTACATGAGGCATTGATAATTTGTTCAATTAGTGCTCAGAGGCAAGCAGTCACTAATGATAATACTCAATGCTAATGCTTAGGCGATGCTACGGAAGTGCTCCGAGTTGGTTGATAAGATAATGAGTCATTCACAAAGGCTCCAGCAGGTGCCATTATTATTGCAAATGCAGGAGCCCTCTCATTGAATCTCATTGAACAATTACTATTCTGACTTAGCCCTGTAAGCCATGAGTCACCCCCTGGGAGAGAGGACTGGTACACTGCAAACCCTTTGCCCCCTGGCTAGATTGTGAAAATCGAAAGCAGGTGTTACACGTCAAGGGAGCCTAAatctttacaccacagcatctgtgttaaacagcagcagcaccacaGGTCACACTCCAACGTATCTTTGCTGAAAGCCCCGGAGGCTGTGAACAAGCAGAGTATCATTCTAAATCTAATGTTTCGATCGATAAGCAACATacattgttgttcttcttctttcggctgctccctttaggggtcgccacagcagatcattggtccacatatttgatttggcacagtttttacgccggatgtccttcctgacgcaaccctccccagttttatccgggcttgggaccaggactgggagtgcactgctgtgtgcaaccccagtggctggggtcggttccccggccgggaattgaacccgggcTGCGGCGATGAGAGCGCCATGGCCTAACCACTCatcctccagggacccttaATAAGCAGCATACATTAACACGCTTGATATCTACCTACCCGGTATAATCATTAATGAATCACTATCATGATATCCTAGAGATGTCCTAGCTATCATTGGTCTTAAGAATAACAATTTTAGccatttctgttattttagtAACCAAGCAATAATCAATCAAAtatcaacagcaacaacaaactTTCGTGTAGCTACACAGATCCATATAGAGTACTGCACGTCTTAGAAGTCAGCATTTTGCttgacaaaataaatacagataattGAATAATCACATGCACCCCTAATCAGTTCTTCCACAATGCTGAGCAAGTTCGTGGTTACGGATcataattagctgattagacgTTAAATTTGAAAATACCATGTTCTGCGTTTTTATTTTCAGCACTACAGTCTTGCTGGTACTATGTTAGCACACCGAACTATTGTGACGGATGTCATGTATCCTGAAAATGTAGAGTAGAATACCACAGTACCGCAGTTTGTCCTGCTCTCAGTTTTGTGTATCTATACATCCACCCCTACTGTTAACATTAGTACCATTAGTTCATTGAAATGTGTGTTTCTCATTTGAATAATCTGGAAGTGGTGCTGAGAATACCGGTCGATACGTCATGTTCTCCACAGTGTTTCTCATAAAGCAGCTGGAGAGAAAAGGAAACTGCAGCTCCTCATCCTATACCCACGGCTACACTGATGCCTGCAATATTGGTTAATCAGTATAGAGGCGTTCGGTCTTGGCGAGTTGACGATGCCTCATCAGGCAGTTAAGCTGTCAGTGCGGTTGCTGACAGCAGGTTCTTGGCGTAGCCGTCGCTTGCAGTACGTGCCAGCTGAGAGCCAAAGAACGGTCGCCTCCTCTAAATAAGCATCCGTTGCGATAAAAAGGCTCGATTCAGCGAGGCAGTCATGCCTGCTCTCGCAAACTGACCCCAGATCCGACACTGCGATTTGGACCCATCCATCACGGGACGGTCGCGCTGCATCATTATGTTGTTTACTGTCTGATGATTGCCTGCACCTTGCTAAGGGGGGCAAAAGCAGATTAGATAAATTACACTCCCATATGGCTCCTCAGATCCGCTATCATCTACCGTATCCAATGCTGTTAAATCACTGTGCATAATTCAATAGCTACGGGGGAGTTTGTTTCAACGCTGTGCCACTTTTTGGACATTTGCATACTACAAGTGCATTGAAATGCCTCCAGGACAATTTCAGTATTTCTCTCGCACgtaaatatacacaaaactGAAAGCAGGACAAACAAGAATAAAACTGCAAATACTCTGAATAATTCATCAGCTCTATTCTCGAGTGGTTTAAATTGACCTTGTGTTAAAACGGTGCCCTTCAACTCTCTGCAGAACTGTACAACAATAAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU338098 True 4430 lncRNA 0.44 2 19962959 19967411

Neighbor

gene id symbol gene type direction distance location
cand1 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding downstream 40487 19898260 ~ 19922472 (-)
si:dkey-39a18.1 LOC108279454 coding downstream 66001 19891912 ~ 19896958 (-)
dyrk2 dyrk2,LOC107757277,LOC107694272 coding downstream 94786 19859501 ~ 19868173 (-)
mcat mcat,LOC107553884,LOC106609558,LOC107732994 coding downstream 286576 19671525 ~ 19676383 (-)
cfap54 cfap54 coding downstream 298010 19633422 ~ 19664949 (-)
wif1 wif1,LOC107655595 coding upstream 275497 20242908 ~ 20256547 (-)
trnaa-ugc_16 NA coding upstream 454990 20422401 ~ 20422472 (-)
lmo3 lmo3,LOC107550907,LOC107757261 coding upstream 492218 20459629 ~ 20500907 (-)
tmem121b cecr6 coding upstream 742558 20709969 ~ 20712919 (-)
mkrn1 mkrn1,LOC107725576 coding upstream 747629 20715040 ~ 20729637 (-)
G285425 NA non-coding downstream 2380 19953613 ~ 19960579 (-)
G285437 NA non-coding downstream 42625 19916609 ~ 19920334 (-)
G285362 NA non-coding downstream 243824 19710897 ~ 19719135 (-)
G285361 NA non-coding downstream 285364 19676840 ~ 19677595 (-)
LOC113532316 NA non-coding downstream 374715 19580854 ~ 19588244 (-)
G285426 NA non-coding upstream 57332 20024743 ~ 20026895 (-)
G285593 NA non-coding upstream 311115 20278526 ~ 20291863 (-)
LOC117599590 NA non-coding upstream 339932 20307343 ~ 20312535 (-)
G285630 NA non-coding upstream 422324 20389735 ~ 20390426 (-)
G285641 NA non-coding upstream 434423 20401834 ~ 20402322 (-)
rap1b rap1b,LOC106576640,LOC107695907 other downstream 227727 19678283 ~ 19735232 (-)
LOC113532190 NA other downstream 1215126 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 1750566 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 1751255 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 1870415 18092217 ~ 18092544 (-)
G285607 NA other upstream 345656 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 1493415 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 2518825 22486236 ~ 22489467 (-)

Expression


Co-expression Network