G285607


Basic Information

Item Value
gene id G285607
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 20313067 ~ 20320050 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU338301
aaacatccattctaaaaataatctaataattttTGCTGCTCAGGACCCTATTAACTGTAAACgaaattccacagaccccctcagtcatctacattttatatacataatccagctattcaaatattaggctcattacttaaatgtgtacagtactgtttcggctatttattggagccgtAGAGCTTTTCCTTCTTGAACGTTCCACTCATATAAcagattttttattaaaattatcatTCAGATTcaagttaacattatttataggcctaccTGTTTTTAAGTTTGGATTTAACGCATTCAATTccagtgaccagtcaaacaggctaatgactataattaatataataactttgataatggtgagttgtgatttccaccactgaaaaaacatgcacacctgTCTATGCTTCTTGGACCCCACTTGGAGAACCATGGGATGTTTTTATCCGCATGGAACTACTAAAATGGCTTAGGAATAACGTCAGGGCCTATGAATATGCATTAATATGCAATGTGTAAATGTCCTCCTGCAATCCCAGCTAGTTTAGCACACCGTTTCTGTAGTTAAACGTTTCTAATCATTTGGAGACATGACAGGTTCAAAGTCATGAAGACACGTTAATCACTCTTTTACTAACTGAGCTCATATGTAATGCGCTGAGATCAGTTTTCTTCATAATAACGAAATatctgttttaaatgttaatacgTGTAATCAACCATTCAAAaggagtttaaaatgtttttcacatttttatgatAGGTGCAATTTAAAGTTAATCAACCTTCAAACTATTTCTTGTGTATGAATTAACCGAAAAAGAAAACTAATACTAAATATATGTgcttataatataattaaaacaaatgaaattatgCAACATACCCATTTCCTTGGTCTTCCTCTGGGTCTCTTCTCCCCTGTGGTCTCAGCTTTCTTCTGTGCTGCTTTGGAAGGACCCTTGTTCTTGCTTCCCTTGGGACGTCCTCTTGGACGTTTAGGGACAGGTTCACCCGTGGGTTCTTGCTGCGGCTTCCTGGGTCTGCCCGGTCCTCTCTTCGGAGGCTCGGCGGCCGGAGCGGGCTGCTCGCGGGATCCCGAGGCTTCGGCGGCTTCCTCACCGCGCGCGCTCATTGCAATGACTCAGAGCCAAACGGGGAAGTTCCTGTAGATCTGTGCTCCTGCAGCGCGCGCGCTCCGTGTCGCGCACCGGACGTCCTGCTGCAGAATTACGAGACGATGGGTGACGGGGGATCCACTGTAGTCTGAGCAAGGTCTGAGAATAACGGTAATGAGTAAACCACGGCAGGTAAGACGTTAGGGATGCAAAACAGAATCTAAAAAGTGGGCCTCGTGATCCTGGAGGTGTCGCGATTTGCACGTGCTGCCCGCTTGAGTATTTGGCACacgcaagaaaaaaaaaaaaaaaaaaaaacacgtctcCTCTTTAGAACCGAGTGGGGGTGGCTATAGTCATAAAATAAGAGAGCGATCAATAAGAGTGTTGGTGTTGTCCGTGCGGACGAGCTCGAGACATTTGCAGAGGGAAATCGGCGCGCTGTCAGATCTGCGCGCTGTGCTCAGTGGAGTTCCCAAAAAACTTCGAGGAAAAACTTTTCTACACGGGTCAGCTTAGGAAAAAACATTCGCCTTTTAAATGCATCTCTGTTGCCCACACGGAAACAAGTCCACTAAGTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU338301 True 1700 TUCP 0.43 3 20313067 20320050

Neighbor

gene id symbol gene type direction distance location
wif1 wif1,LOC107655595 coding downstream 56520 20242908 ~ 20256547 (-)
cand1 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding downstream 390595 19898260 ~ 19922472 (-)
si:dkey-39a18.1 LOC108279454 coding downstream 416109 19891912 ~ 19896958 (-)
dyrk2 dyrk2,LOC107757277,LOC107694272 coding downstream 444894 19859501 ~ 19868173 (-)
mcat mcat,LOC107553884,LOC106609558,LOC107732994 coding downstream 636684 19671525 ~ 19676383 (-)
trnaa-ugc_16 NA coding upstream 102351 20422401 ~ 20422472 (-)
lmo3 lmo3,LOC107550907,LOC107757261 coding upstream 139579 20459629 ~ 20500907 (-)
tmem121b cecr6 coding upstream 389919 20709969 ~ 20712919 (-)
mkrn1 mkrn1,LOC107725576 coding upstream 394990 20715040 ~ 20729637 (-)
tmem178b tmem178b,LOC107725619,LOC107694293 coding upstream 472423 20792473 ~ 20894630 (-)
LOC117599590 NA non-coding downstream 532 20307343 ~ 20312535 (-)
G285593 NA non-coding downstream 21204 20278526 ~ 20291863 (-)
G285426 NA non-coding downstream 286172 20024743 ~ 20026895 (-)
G285428 NA non-coding downstream 345656 19962959 ~ 19967411 (-)
G285425 NA non-coding downstream 352488 19953613 ~ 19960579 (-)
G285630 NA non-coding upstream 69685 20389735 ~ 20390426 (-)
G285641 NA non-coding upstream 81784 20401834 ~ 20402322 (-)
G285642 NA non-coding upstream 82972 20403022 ~ 20403257 (-)
G285693 NA non-coding upstream 120171 20440221 ~ 20441928 (-)
G285791 NA non-coding upstream 258206 20578256 ~ 20578483 (-)
rap1b rap1b,LOC106576640,LOC107695907 other downstream 577835 19678283 ~ 19735232 (-)
LOC113532190 NA other downstream 1565234 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 2100674 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 2101363 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 2220523 18092217 ~ 18092544 (-)
LOC113544587 NA other upstream 1140776 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 2166186 22486236 ~ 22489467 (-)

Expression


Co-expression Network