G285641


Basic Information

Item Value
gene id G285641
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 20401834 ~ 20402322 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU338338
CCGGGTTGAGCTTGTTACTAAAGATGATGACACgtttcatgaataaatattgaCAGTGATGTGATAGCAACCTGCACAGTAAATTCAAACAAAATCCCAATGCatgaagccaaaaaaaaaaagtttaatgaaaaaaaatgaaaattagtGTTGCTGATTTCACCCATGAAAACAATCATGTAAATGCTTAGGTCACATATATTTCAGTCAACATAGCCTTTCTGTGTGTATTAAAGacataatgacattttaaagtaCATTAGCATTGATTTACACATGCAATGATCAGAAGCAGGTAATATGTCAAAGAAATGAATTACCTACAGGACAAAATGCtacatttcaaatttataaCCAAAATCTGTTGAGTCCCAACAGATTTGTTCACTTTAGATTGTAGCAAGTATTTGTATGCAATCCCTGATAAATTAATTACATacaattacataattacatatatacaataatatattcaattacatatatata

Function

GO: NA

KEGG:

id description
ko00140 Steroid hormone biosynthesis
ko00830 Retinol metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU338338 True 489 lncRNA 0.29 1 20401834 20402322

Neighbor

gene id symbol gene type direction distance location
wif1 wif1,LOC107655595 coding downstream 145287 20242908 ~ 20256547 (-)
cand1 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding downstream 479362 19898260 ~ 19922472 (-)
si:dkey-39a18.1 LOC108279454 coding downstream 504876 19891912 ~ 19896958 (-)
dyrk2 dyrk2,LOC107757277,LOC107694272 coding downstream 533661 19859501 ~ 19868173 (-)
mcat mcat,LOC107553884,LOC106609558,LOC107732994 coding downstream 725451 19671525 ~ 19676383 (-)
trnaa-ugc_16 NA coding upstream 20079 20422401 ~ 20422472 (-)
lmo3 lmo3,LOC107550907,LOC107757261 coding upstream 57307 20459629 ~ 20500907 (-)
tmem121b cecr6 coding upstream 307647 20709969 ~ 20712919 (-)
mkrn1 mkrn1,LOC107725576 coding upstream 312718 20715040 ~ 20729637 (-)
tmem178b tmem178b,LOC107725619,LOC107694293 coding upstream 390151 20792473 ~ 20894630 (-)
G285630 NA non-coding downstream 11408 20389735 ~ 20390426 (-)
LOC117599590 NA non-coding downstream 89299 20307343 ~ 20312535 (-)
G285593 NA non-coding downstream 109971 20278526 ~ 20291863 (-)
G285426 NA non-coding downstream 374939 20024743 ~ 20026895 (-)
G285428 NA non-coding downstream 434423 19962959 ~ 19967411 (-)
G285642 NA non-coding upstream 700 20403022 ~ 20403257 (-)
G285693 NA non-coding upstream 37899 20440221 ~ 20441928 (-)
G285791 NA non-coding upstream 175934 20578256 ~ 20578483 (-)
G285852 LOC108279938 non-coding upstream 301735 20704057 ~ 20776908 (-)
LOC117599568 NA non-coding upstream 334646 20736968 ~ 20749220 (-)
G285607 NA other downstream 81784 20313067 ~ 20320050 (-)
rap1b rap1b,LOC106576640,LOC107695907 other downstream 666602 19678283 ~ 19735232 (-)
LOC113532190 NA other downstream 1654001 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 2189441 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 2190130 18156824 ~ 18211704 (-)
LOC113544587 NA other upstream 1058504 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 2083914 22486236 ~ 22489467 (-)

Expression


Co-expression Network