G285934


Basic Information

Item Value
gene id G285934
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 20928521 ~ 20930920 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU338654
TGCACTTCTTTAATATATCAGTTTTTCATATTCACAACAAATACATTAAGCTCTTTCTCCTTTTATATTATACAgtcttaaatatttttacacagatttttttttcagaatttcatCTATCAAAATCTCTTTTCTTAACCTTTATTTCTTCATTGGAAACATTGTATAACTCATttcattgtttgttttaacTCCATGCCTCCTAGCAAACAGACAGTATTTTCTTTGTACAGCTATTTACAAGTGAAAAGAGTCTCCCAAAAGCTTCTATGATGGTTCTCGGTTGAGTTCATTTATACTAGGACTTTAAGGTGCAGGCAAGGCAAAGGAACAAAAGGAGATACGAGGGAGTCAACTAAGAAACAAACCAGGATGGAGAAGGAGGGTGTGAGAAGGAAATGAGTTTTAGCAGGCcctaaacaggaaaaaaaaagatccccAAGTGTGCCACAATCAGAGCGCAATCATAACATTCTCATATAAAATAAGGAACtcttgaaaataaatacagcactCTTAAAAACTTGCCACTTTGTGTATGCCGACTAAAATGAGGATTGACATAGTCCATGGCATGTGGGCAAGAAGGAGTCCATTTAAACATCTGAAAATGTATCAGGCCACCAAGCAGGTCATATCCAACAGAATCAGAACGTCCTCGTCGATGCTTTCTGCTTAATGACTTAATACAGAGCACAATcaaaaaaaagagagaaagaaaattccttcaaaataaaaataggcCATTAGGTACAAGTCCTTATATGGAACTATGTAACAGAGTGCAAGAATCAGGGTAACTGTAGCCTTCAGTCAATCTGTGTGAGGATCACTGAGAGGATCTGTAGCTTTACTTGAGACACTGAgaaatgtgtagtctcatgCAATACAAGGGCAGACAAATTTACACCATTCGTTGTGTCTTAGATCAGAAATAGCCAACCAAAGGCTTTCATCAACACAGTgtcacaaatgtttttttaaatttagctttATACCCTTGGCCATATCTCATAATGTGTAGCTTTAAATAATGTGTAGTTTTAAATCCTGTTGtgattgagattttttttaagtcatgcTTTAAACGCTCTGACAAAATGTTCTGTCCATAGAAAGGCAAATTGCTTGTTTGCATCAATCTGCTTTAGAAAAGTGCAAAGGACACACAGCTTATCATCCATTTACGCAATCACAGAAaacaaacacttaaaaataacCCCCTCCGAGaggtgaagagaaaaaaaaaaaaaaaacacacacacacacacaataaaattaaagctacataaataaatctacatttGCAGGCCTGCCTGTCCaagcaaacaaatgaaacaacataaaaataactGTTTTAATACCAAACACACTGGAATGAAGACGCATCAAACTTCAAATGTTTAGTCTCCAAGGATGGCGTGCCTCCATCGAAGTCTGTAGTCAAAGCCAGGAAGAAAAGACGAAGCGTAGATTTTGCCTGGGGACGTCTGCGAGTGCAACATTTCACACGGCCACCTCACAGTGAGTgtagcagcagcaacaacataCGCTTCAGACACGACGCAAAAGATCTACAGTGTGCAACTAAACATGCTGATGGAGAATCAGCAACTGCTATCCATAAACCGATCCTACTTCAGCAGTCTTTCAAACACGTCCCTTAATTCACCTAAAAGTGAAGCAGCTCGTTTACTTAATGAACATGTGACACCTGAAGGTTTGGTAAAACCTGTAACACAATGTTCCAGACTCTGTTTCCATGTGACACCGAGACAGAGTTCCTTTCATTTAGCTCACACAAACCATGTATGAACAGggaaaataatgaagaaaagaaaaccagtTCCAGCTGACAATAAAGCTTGCTGCTTCTCACAGTAACCTTGTCCTATTAAACAGAATATTTGCTTGGGCCATACTGGATAACTCCGAAAATAGTCAGAAGTGTTGTCAGTACTTCTGATAATTTAACTTGAAGGAATGTACTGGATGTCTCTAAACTAAATGACATTCAAGTCTTCTGGCTTGAATGCCACCCTATGAGCAATGAGCAGGGCGGGGCACTCTCAAATACAGAATCACACGACTGGTCAAAGTGTTGgtcctgcactctgattggccAACGCTAACTTATAACAATGTGAGGAGTGGATGGGGCGTCATTAAGTTCCATCATAATAGCAAGACTTTAATTTCCTTCATTTGTCCTCTTCTTTCATCCAGTGGCCATCCTCATGTTCCTGCAAATCAGtgtcatttgtattttatgCGCTTTTCCTGGTTTTGGGTTGttgtggtggttttttttttaatcagccgTGATACCCagctgagacttttttttttttttttttttttttttaaactaattttttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU338654 True 2380 lncRNA 0.38 2 20928521 20930920

Neighbor

gene id symbol gene type direction distance location
tmem178b tmem178b,LOC107725619,LOC107694293 coding downstream 33891 20792473 ~ 20894630 (-)
mkrn1 mkrn1,LOC107725576 coding downstream 198884 20715040 ~ 20729637 (-)
tmem121b cecr6 coding downstream 215602 20709969 ~ 20712919 (-)
lmo3 lmo3,LOC107550907,LOC107757261 coding downstream 427614 20459629 ~ 20500907 (-)
trnaa-ugc_16 NA coding downstream 506049 20422401 ~ 20422472 (-)
btbd11a btbd11a,btbd11,LOC108279962,LOC108426402,LOC107757250,LOC107725623,LOC107655613,LOC107694300,LOC105027830 coding upstream 8825 20939745 ~ 21133493 (-)
si:dkey-222f8.3 LOC108279736 coding upstream 233786 21164706 ~ 21172260 (-)
LOC113531875 LOC108279736 coding upstream 243264 21174184 ~ 21179511 (-)
ppfibp1a LOC108279739,LOC108426406 coding upstream 259005 21189925 ~ 21226343 (-)
nrf1 nrf1,LOC107729850,LOC107676924,LOC107690626 coding upstream 672980 21603900 ~ 21630503 (-)
G285911 NA non-coding downstream 22863 20905423 ~ 20905658 (-)
G285907 NA non-coding downstream 32034 20896281 ~ 20896487 (-)
G285852 LOC108279938 non-coding downstream 151613 20704057 ~ 20776908 (-)
G285859 NA non-coding downstream 176254 20749766 ~ 20752267 (-)
LOC117599568 NA non-coding downstream 179301 20736968 ~ 20749220 (-)
G286192 tnnt2c,LOC107560724,LOC107655611 non-coding upstream 173888 21104808 ~ 21162920 (-)
G286212 NA non-coding upstream 210554 21141474 ~ 21142688 (-)
G286272 NA non-coding upstream 304262 21235182 ~ 21235425 (-)
G286301 NA non-coding upstream 373335 21304255 ~ 21304529 (-)
G286305 NA non-coding upstream 478124 21409044 ~ 21409298 (-)
G285607 NA other downstream 608471 20313067 ~ 20320050 (-)
rap1b rap1b,LOC106576640,LOC107695907 other downstream 1193289 19678283 ~ 19735232 (-)
LOC113532190 NA other downstream 2180688 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 2716128 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 2716817 18156824 ~ 18211704 (-)
LOC113544587 NA other upstream 529906 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 1555316 22486236 ~ 22489467 (-)

Expression


Co-expression Network