G286192 (tnnt2c,LOC107560724,LOC107655611)


Basic Information

Item Value
gene id G286192
gene name tnnt2c,LOC107560724,LOC107655611
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 21104808 ~ 21162920 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU338918
CTgaacaaaaaaaggcaaatatttaatcaaaagtgaataaaatgttttattaatgtttagttGTCACTAAAATCATGTTTGAAAGTGGTCCTCGATTGTCTGTTTTAACATTCAATTTGAAGTGTGCTGTCGAGTTTGAGATAACACCTTGTCCATGCAGGCATGCCTTCCATTCCACCATGCAGATAAAGAAAACGTACAGTTGATAACACACTTAAAAATAGCACCTTACAATAGTTACCTACTTTAATGTGACAAAAGAATTTAAACACACAGGAAACAaaactgattaatttttttttcaaaaactatTTCATACAGTTGAGTACAAAAGTTTGtatacccttaggacaaaatgaagaagacagagaaaaatgtaatttatagcaataagacatttagtgtgttagatttcacagatgttccttcctTATTACAAGTAAGAAAATTgtcaaatagaaaaaaatgctattattaCAATTTGCGTCTCCATTGCTGTATTTGATTTTAATATTCTCCAGTAACTTGTCTGCTCACactttgcctttataactgcctCCAACCTCGTCCATTTCCTTTGAACAGCTCTTCCCCCAGCagcccacccacccacacatcCTTCTAGAGATATCTGTTCTAACTCAGCCAGACAGTTTGTCAAAtctttgcccattcttcttgatAAATGTCTGTTCTATCTATAGTAGATGTCAAACCCTGCCTTCTTATACTacagttatttttaaactattttccTGTTGATTTTGCCTCATGTATTGTCCTGCTATATACAcaaatttcacatttaacaTCTTGGAattagattttcttttattggAGATACCTTTCAAAATAGTGATGCATTTTCCTTCTGTTCCCTTCACACACCACGGGGAATGCAAACTTTTGTATAACTTTTCAGTTATGTAAGTGATACAGAATAAACCAGAAAGACAATTAGAACTGCAAGCTTTAACACATTGGATGTCTGTCAGTCTTGCATATGTAGTGGCAGCAAACATGGGCTCAGCTGATCTTTCTTACCAAAAGAATTCACTGTAAATCAAAGATAAAATCAAATTCTTCAAAGttaaatcaataaagttaagGTGTGATGTGACCAGGAGTCTATGCCACTACATCATATATTCCCTAATTCACACTATCTACTTCCAGGACTTCCTAGTTGTCTTGGCTGTCTTGCTGTACCTCTGATGGTCACTGACACGGTTGCGCAGCACATTGATGTCATACTTCTGCCTCTTCAGCTTCTCACCCAGGTCAAACTTCTCAGCATGTAGCTGCTGCAGCCACTGCCAGAGATCTCTGGCCTTCTCAGCCAGTTTCTCCTGGTTAAGGTGGTCGATGTTGAGTGGCTTGCGGCGCTCCATGAGGGCCTTTGTCTTCTTCTCACGTTCTGTCAGCTTCTTGCCCTTCTTCTGTTCCACCTTCTGCAGGTAGCCTCCATAGCCCTTATTGGTGAGGAGTTTCTTCTTCTTGGCATCCTCCTCAGCCCGGAGTTTAGCTGCCTCCTCCTCACGCCGTGCCCTTTCCTCAGCCAAACGAGCCTGTCTCTCACGATCCTGCTCGGCTCGAATGCGCTGCTGCTCTGCACGATCTGCACGTCTCCGCTCAATGCGGGTCTTCAGGGCTACcagctcctcttcctctttctgccTGTTGGTAAAGTGTGCCTCAATGAGGCTCTGAAGCTCATTGTAGTCCTTCTCGACACGTTTACGATGGAGGTCGTCAAAGTCCACCTTCTCGCCATCGGGGAGCTTGGGAGGGACAATGGTGGGGACATACAACTTAGGCTTAGGCTTGGagtcttcttcctcttcttcctgcaCCTCATTTTCTTCCTCTGCCTCATTTTCATCATCCTCTATTTGAGGGGCCTCCTCTAcattctcctcttcctcagcctcttcctctgcttcctcctcctcttcttcataTTCCTCCACAATCTCCTCAGTGTCAGACATTGTAGCTATGTTGTGCCCTGTCTGTGAGAGAACAGAAGGTTGAGGAACAGCCTCAGCTCACCACTTACCAGCTGGAGATAAGAAGACTGAAGGGAGTGAGCTgaggaagaggag

Function

symbol description
tnnt2c Predicted to enable tropomyosin binding activity; troponin C binding activity; and troponin I binding activity. Acts upstream of or within sarcomere organization. Predicted to be part of troponin complex. Is expressed in mesoderm; musculature system; somite; and trunk mesenchyme. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple). Orthologous to human TNNT2 (troponin T2, cardiac type).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU338918 True 2105 lncRNA 0.42 2 21104808 21162920

Neighbor

gene id symbol gene type direction distance location
tmem178b tmem178b,LOC107725619,LOC107694293 coding downstream 210178 20792473 ~ 20894630 (-)
mkrn1 mkrn1,LOC107725576 coding downstream 375171 20715040 ~ 20729637 (-)
tmem121b cecr6 coding downstream 391889 20709969 ~ 20712919 (-)
lmo3 lmo3,LOC107550907,LOC107757261 coding downstream 603901 20459629 ~ 20500907 (-)
trnaa-ugc_16 NA coding downstream 682336 20422401 ~ 20422472 (-)
si:dkey-222f8.3 LOC108279736 coding upstream 1786 21164706 ~ 21172260 (-)
LOC113531875 LOC108279736 coding upstream 11264 21174184 ~ 21179511 (-)
ppfibp1a LOC108279739,LOC108426406 coding upstream 27005 21189925 ~ 21226343 (-)
nrf1 nrf1,LOC107729850,LOC107676924,LOC107690626 coding upstream 440980 21603900 ~ 21630503 (-)
ints13 asun,LOC107733003,LOC107589038,LOC107738827 coding upstream 568669 21731589 ~ 21751582 (-)
G285934 NA non-coding downstream 173888 20928521 ~ 20930920 (-)
G285911 NA non-coding downstream 199150 20905423 ~ 20905658 (-)
G285907 NA non-coding downstream 208321 20896281 ~ 20896487 (-)
G285852 LOC108279938 non-coding downstream 327900 20704057 ~ 20776908 (-)
G286272 NA non-coding upstream 72262 21235182 ~ 21235425 (-)
G286301 NA non-coding upstream 141335 21304255 ~ 21304529 (-)
G286305 NA non-coding upstream 246124 21409044 ~ 21409298 (-)
LOC117599448 NA non-coding upstream 328721 21491641 ~ 21492712 (-)
G286337 LOC107739129 non-coding upstream 333457 21496377 ~ 21496619 (-)
G285607 NA other downstream 784758 20313067 ~ 20320050 (-)
rap1b rap1b,LOC106576640,LOC107695907 other downstream 1369576 19678283 ~ 19735232 (-)
LOC113532190 NA other downstream 2356975 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 2892415 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 2893104 18156824 ~ 18211704 (-)
LOC113544587 NA other upstream 297906 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 1323316 22486236 ~ 22489467 (-)

Expression


Co-expression Network