G286337 (LOC107739129)


Basic Information

Item Value
gene id G286337
gene name LOC107739129
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 21496377 ~ 21496619 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU339096
ggagactcctgtctgacctcctctgacaactggtccatcaccatagcaaacaggaaggggctcagagccgatccctgatgcagtcccacctccactttgaactcctctgtctgacctacagcacacctcaccactgtcctgctcctctcatacatgtcctgcaccactctgacatacttctctgctactcctgccttcctcatacagtaccacagctcttctcttggcaccctgtcatacgcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU339096 True 243 lncRNA 0.54 1 21496377 21496619

Neighbor

gene id symbol gene type direction distance location
ppfibp1a LOC108279739,LOC108426406 coding downstream 270034 21189925 ~ 21226343 (-)
LOC113531875 LOC108279736 coding downstream 316866 21174184 ~ 21179511 (-)
si:dkey-222f8.3 LOC108279736 coding downstream 324117 21164706 ~ 21172260 (-)
btbd11a btbd11a,btbd11,LOC108279962,LOC108426402,LOC107757250,LOC107725623,LOC107655613,LOC107694300,LOC105027830 coding downstream 362884 20939745 ~ 21133493 (-)
tmem178b tmem178b,LOC107725619,LOC107694293 coding downstream 601747 20792473 ~ 20894630 (-)
nrf1 nrf1,LOC107729850,LOC107676924,LOC107690626 coding upstream 107281 21603900 ~ 21630503 (-)
ints13 asun,LOC107733003,LOC107589038,LOC107738827 coding upstream 234970 21731589 ~ 21751582 (-)
cog5 cog5,LOC107656447,LOC107583928,LOC107658957 coding upstream 265062 21761681 ~ 21782085 (-)
slco1c1 slco1c1,LOC108279430,LOC108435080,LOC107729145,LOC107656392,LOC107590530,LOC107658953 coding upstream 300286 21796905 ~ 21842435 (-)
pde3a pde3a coding upstream 363861 21860480 ~ 21931987 (-)
LOC117599448 NA non-coding downstream 3665 21491641 ~ 21492712 (-)
G286305 NA non-coding downstream 87079 21409044 ~ 21409298 (-)
G286301 NA non-coding downstream 191848 21304255 ~ 21304529 (-)
G286272 NA non-coding downstream 260952 21235182 ~ 21235425 (-)
G286192 tnnt2c,LOC107560724,LOC107655611 non-coding downstream 333457 21104808 ~ 21162920 (-)
G286546 NA non-coding upstream 77206 21573825 ~ 21574100 (-)
LOC113544500 NA non-coding upstream 87446 21584065 ~ 21598400 (-)
LOC113544611 NA non-coding upstream 155003 21651622 ~ 21652431 (-)
G286613 NA non-coding upstream 289533 21786152 ~ 21787372 (-)
G286694 NA non-coding upstream 575592 22072211 ~ 22075279 (-)
LOC113544587 NA other downstream 25277 21460826 ~ 21471100 (-)
G285607 NA other downstream 1176327 20313067 ~ 20320050 (-)
rap1b rap1b,LOC106576640,LOC107695907 other downstream 1761145 19678283 ~ 19735232 (-)
LOC113532190 NA other downstream 2748544 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 3283984 18212322 ~ 18212393 (-)
G286852 irf5,LOC107655585 other upstream 989617 22486236 ~ 22489467 (-)

Expression


Co-expression Network