G286613


Basic Information

Item Value
gene id G286613
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 21786152 ~ 21787372 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU339429
CTTTGAGCTGAGATGAATGGCAGGCAGAGCAGGATAAGAATTCCGATTTCGACGTAGAGGAACAAAGCCACTGCAGTCCACTGCAACGTCATCTTTACAGGCCTATATTTCCTGTTTCCGTGTAGTTTAACTGAGGAACATCATTAAACAGTCCTGATAAACGGCGCAGAAAGTTTACAACCGTCGCGTTAAAGCAAAGCCCTTTTTACTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU339429 True 213 lncRNA 0.45 2 21786152 21787372

Neighbor

gene id symbol gene type direction distance location
cog5 cog5,LOC107656447,LOC107583928,LOC107658957 coding downstream 4067 21761681 ~ 21782085 (-)
ints13 asun,LOC107733003,LOC107589038,LOC107738827 coding downstream 34570 21731589 ~ 21751582 (-)
nrf1 nrf1,LOC107729850,LOC107676924,LOC107690626 coding downstream 155649 21603900 ~ 21630503 (-)
ppfibp1a LOC108279739,LOC108426406 coding downstream 559809 21189925 ~ 21226343 (-)
LOC113531875 LOC108279736 coding downstream 606641 21174184 ~ 21179511 (-)
slco1c1 slco1c1,LOC108279430,LOC108435080,LOC107729145,LOC107656392,LOC107590530,LOC107658953 coding upstream 9533 21796905 ~ 21842435 (-)
pde3a pde3a coding upstream 73108 21860480 ~ 21931987 (-)
aebp2 aebp2,LOC101464281 coding upstream 177760 21965132 ~ 21980322 (-)
plekha5 plekha5,LOC106609184 coding upstream 195644 21983016 ~ 22089419 (-)
lrrc4.1 lrrc4.1,LOC108279533 coding upstream 630733 22418105 ~ 22423754 (-)
LOC113544611 NA non-coding downstream 133721 21651622 ~ 21652431 (-)
LOC113544500 NA non-coding downstream 187752 21584065 ~ 21598400 (-)
G286546 NA non-coding downstream 212052 21573825 ~ 21574100 (-)
G286337 LOC107739129 non-coding downstream 289533 21496377 ~ 21496619 (-)
LOC117599448 NA non-coding downstream 293440 21491641 ~ 21492712 (-)
G286694 NA non-coding upstream 284839 22072211 ~ 22075279 (-)
G286698 NA non-coding upstream 310236 22097608 ~ 22097821 (-)
G286700 NA non-coding upstream 329225 22116597 ~ 22116953 (-)
LOC113544512 NA non-coding upstream 360901 22148273 ~ 22149018 (-)
G286740 NA non-coding upstream 401947 22189319 ~ 22235065 (-)
LOC113544587 NA other downstream 315052 21460826 ~ 21471100 (-)
G285607 NA other downstream 1466102 20313067 ~ 20320050 (-)
rap1b rap1b,LOC106576640,LOC107695907 other downstream 2050920 19678283 ~ 19735232 (-)
LOC113532190 NA other downstream 3038319 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 3573759 18212322 ~ 18212393 (-)
G286852 irf5,LOC107655585 other upstream 698864 22486236 ~ 22489467 (-)

Expression


Co-expression Network