G286694


Basic Information

Item Value
gene id G286694
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 22072211 ~ 22075279 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU339527
CTGTTCTCCATGTTTGCCTCTTGCCATTCCACGATCCCTTCTGCTTTTGTTGTGACTATATATACATTCATTGTGGATAAATATGAGATGgtgtattgtatttgtattcagtgtACTACGTCCATTAACCCAGCACTATGGCTTTCCCTGCGGCTTTTACTCTTTGGCTATATGTACGAGCCTGGTGTAGCTGCAGTGAGTCAGGGATCAGATTAGACCGTactgaatatgaaatatgaaaaggtcaaataatattttgttttaagttCAAAATCTCAAAATGATTTACATACAAAAGGTCCAATGTGAAAACAAAGCGTTTAGGATAAAGCATGTTAAAGAACCAACAAAAAATTCAATGAATTGAAGTTATTgcgaatgaatgaatcatgaaaatGAATGGTGAAAAGTCTGTTTAACAAAACTGGTCCCAAGACTAAAATCACTTGTGTGGGCTGCCGATAATTCAGAAAATGCAAGTTCAAAGGAACTAAGctgcatattttattaattttctatattagtatatttgctcattttcttGTTGCTAGTAATTAGCAACCTGAGAGGtcagcgtgcacacacacacacacacacacacacacacactctttcagaGAGCAGTGAAATGGTGGAAGAAACACATGGCATGACTGTGAGAAACGGAGTTGGATCAGTTTAAAGTACGTCTGGTTGGTTAATGCGTCTCACCTTGAAAAAAATGTAGAGTTTATCCAGCATTTCTGCTGTGGATATATTAGTGGTAAATAATGTTTAGTATATTAGACTTATTACTAGTTAAAGTTTTAATCCTGGGAGTACAACAGTTACAGAATCTGAAGTCTGTCCAAATCTACACATCTGCACTCAGTAATTGTATATGTGCAACGTCACCTACGTGGGAGGTCTTAATGAAAGGGACAGGGAGCGTGGGAACGAggcaggtgtacctaataatCTGGAAACTGAGTGTATACTAACTGAAATGAAGTCCTACGTATAGGCTTTTTACTATTTGTGCTGAAAGTCAAaatataagtaaaaaataattttaaaaaccatCTAAAGAAACTggacatatttttatataatgtattgaTGAAAGGGTTAACAAATGCATCAGTGACGTAACACTGTACTGAGAAACATGCTTTCTGGAAGACCCAAAACACAtcctacacaaacacatccCTGTATCTCAGAATACGTGACTGCTCGTcttgcttcattttctctcacacatGTGCTTCATATAATCATACGGACGTGTTCTCCACTGCTATTATTTGCCAAAGAAAGAAATCATTGTCATCCTCACTGCTGCACTACTGACTTCGAGTTGCCATCCTGAATTAATTTCTCTAACACTTGCACGTGTTCTGCTTCCTCTTTATTACcttttcttgcatttttataatgttcatttaaaacagaattatttaaatacagtcGCTTAGCCTACATCAGGTCGTGTTCATAGACTAATTTTAGCCATGGAATGGAAATGTCTGTCCAAGCCACATTGGACAGCCAAAACAAGTCCATGTGCGTAGAGTGTTCAAGCCCTCCATAGCAAACAGCTGATGCAGTCTAACTCTATTTGGACAGGATTCTGTGTCTAGTATTATCCTGCTGATCTTTGGCTATAGCTACACTTTCCATATAGTCTGCACTTCCAGTAATCCCCACTGACTCCTGTCTGGAACCCTGCTGCCACTGCAGGAGAAGCTAACTGCAGCTTTTCATGGGCTCCTCCCATGCTCTGGCTAGACTTCTACACAAGGATGCCCATTAGTGGGGATGATGCCCTCAGTGATGTGTGCTGCAGTCATCTATGTGAGACCAGAACTTTCCTGAACCACTGATTTTCATAGTCTGAGGCTGCTGTGGATTTTAATGTTGTATGCTTTTGCAGATGCTGAATGTGGCAGGCAGGGTGAAGATAAATAGCTATTGAATATAATGTGAGGTTTTGGGATGATCTGGACTGAGAGGCGTATGGATTTGGcagagcaggttttttttttttttgtagggaTGCTGCCTTTAATAGGACCTGTATTCTGTATGCATACCACCCTGTATATAATAGGATTAAGCAACTGAGAAGGAAAGCTATCAGTGCATTTACTTTGATATATTCTCATTCCAGTATGATTCACGAATGTGGTCCTTTGAATGATTTCACCCAGCATGAACACGTAAgtcctagaaaaaaaacaaaatattcaacAATGAAACCTATATCATGCCAAAAACCTGTGTGTAGGTTGCACTGATGCTcagcactgctgtgtgtgtggaagtgttttCCTCCTCTGTGATGTACAGAATTCTGAACACGCAACCGGCTTTGGACCTGGGGCGTTTGGCCTCAGAACCCAAGCATAAGCAGCTGTTGCTGATGGATTCCTTTGGCTGATGAACTAATTGTTGTTTTAGCTGACAGCGTAGCTGACAGTATTGATGAAGAGTTCAGAGCGTGGTGACGGAATATATATGATGGTAAAAAGCTATGCAGAGATTTGCTGGATTACTCACTTAATCCAGGTACACAGAGGAGATGTTTATAATTGTTGACTGAAGATTTACTACTTTCGCTCCTTCTCTCCAGCTACAGTTCCAGTGGATAACATGGAGCTATACTGAACATGGCAGTGAATGAATTTGTCATAAAGAGAAACACAAGTTAAGTATATACTGTAGCTGGTTCATTGAACTCTGTATGACTAACAGGTGGTAAGAATCTGGACACCCTCACACTTCCAGAGAACTTAGTCACAAAttggttattttaattttttaaatagaaataccGCTAGTACCTGGATAACCTACAGTCTCctgcaaaagtattggaacacaaaGCTCAATTCTCTCGCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU339527 True 2884 lncRNA 0.39 2 22072211 22075279

Neighbor

gene id symbol gene type direction distance location
aebp2 aebp2,LOC101464281 coding downstream 91889 21965132 ~ 21980322 (-)
pde3a pde3a coding downstream 140224 21860480 ~ 21931987 (-)
slco1c1 slco1c1,LOC108279430,LOC108435080,LOC107729145,LOC107656392,LOC107590530,LOC107658953 coding downstream 229776 21796905 ~ 21842435 (-)
cog5 cog5,LOC107656447,LOC107583928,LOC107658957 coding downstream 290126 21761681 ~ 21782085 (-)
ints13 asun,LOC107733003,LOC107589038,LOC107738827 coding downstream 320629 21731589 ~ 21751582 (-)
lrrc4.1 lrrc4.1,LOC108279533 coding upstream 342826 22418105 ~ 22423754 (-)
si:dkey-159a18.1 LOC108279534 coding upstream 422110 22497389 ~ 22523790 (-)
LOC113544588 prr5 coding upstream 554768 22630047 ~ 22659391 (-)
pax4 pax4 coding upstream 595829 22671108 ~ 22683049 (-)
LOC113544635 LOC108279625,LOC108279584,LOC100305028,LOC108279586,LOC108279618,LOC108279585 coding upstream 740556 22815835 ~ 22817249 (-)
G286613 NA non-coding downstream 284839 21786152 ~ 21787372 (-)
LOC113544611 NA non-coding downstream 419780 21651622 ~ 21652431 (-)
LOC113544500 NA non-coding downstream 473811 21584065 ~ 21598400 (-)
G286546 NA non-coding downstream 498111 21573825 ~ 21574100 (-)
G286337 LOC107739129 non-coding downstream 575592 21496377 ~ 21496619 (-)
G286698 NA non-coding upstream 22329 22097608 ~ 22097821 (-)
G286700 NA non-coding upstream 41318 22116597 ~ 22116953 (-)
LOC113544512 NA non-coding upstream 72994 22148273 ~ 22149018 (-)
G286740 NA non-coding upstream 114040 22189319 ~ 22235065 (-)
G286810 NA non-coding upstream 260625 22335904 ~ 22453567 (-)
LOC113544587 NA other downstream 601111 21460826 ~ 21471100 (-)
G285607 NA other downstream 1752161 20313067 ~ 20320050 (-)
rap1b rap1b,LOC106576640,LOC107695907 other downstream 2336979 19678283 ~ 19735232 (-)
LOC113532190 NA other downstream 3324378 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 3859818 18212322 ~ 18212393 (-)
G286852 irf5,LOC107655585 other upstream 410957 22486236 ~ 22489467 (-)

Expression


Co-expression Network