Gene
RNA
| Item | Value |
|---|---|
| gene id | G286700 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047612.1 |
| NCBI id | CM018558.1 |
| chromosome length | 23372418 |
| location | 22116597 ~ 22116953 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU339533 | True | 357 | lncRNA | 0.49 | 1 | 22116597 | 22116953 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| plekha5 | plekha5,LOC106609184 | coding | downstream | 27178 | 21983016 ~ 22089419 (-) |
| aebp2 | aebp2,LOC101464281 | coding | downstream | 136275 | 21965132 ~ 21980322 (-) |
| pde3a | pde3a | coding | downstream | 184610 | 21860480 ~ 21931987 (-) |
| slco1c1 | slco1c1,LOC108279430,LOC108435080,LOC107729145,LOC107656392,LOC107590530,LOC107658953 | coding | downstream | 274162 | 21796905 ~ 21842435 (-) |
| cog5 | cog5,LOC107656447,LOC107583928,LOC107658957 | coding | downstream | 334512 | 21761681 ~ 21782085 (-) |
| lrrc4.1 | lrrc4.1,LOC108279533 | coding | upstream | 301152 | 22418105 ~ 22423754 (-) |
| si:dkey-159a18.1 | LOC108279534 | coding | upstream | 380436 | 22497389 ~ 22523790 (-) |
| LOC113544588 | prr5 | coding | upstream | 513094 | 22630047 ~ 22659391 (-) |
| pax4 | pax4 | coding | upstream | 554155 | 22671108 ~ 22683049 (-) |
| LOC113544635 | LOC108279625,LOC108279584,LOC100305028,LOC108279586,LOC108279618,LOC108279585 | coding | upstream | 698882 | 22815835 ~ 22817249 (-) |
| G286698 | NA | non-coding | downstream | 18776 | 22097608 ~ 22097821 (-) |
| G286694 | NA | non-coding | downstream | 41318 | 22072211 ~ 22075279 (-) |
| G286613 | NA | non-coding | downstream | 329225 | 21786152 ~ 21787372 (-) |
| LOC113544611 | NA | non-coding | downstream | 464166 | 21651622 ~ 21652431 (-) |
| LOC113544500 | NA | non-coding | downstream | 518197 | 21584065 ~ 21598400 (-) |
| LOC113544512 | NA | non-coding | upstream | 31320 | 22148273 ~ 22149018 (-) |
| G286740 | NA | non-coding | upstream | 72366 | 22189319 ~ 22235065 (-) |
| G286810 | NA | non-coding | upstream | 218951 | 22335904 ~ 22453567 (-) |
| G286832 | NA | non-coding | upstream | 325097 | 22442050 ~ 22447429 (-) |
| G286838 | NA | non-coding | upstream | 353458 | 22470411 ~ 22471009 (-) |
| LOC113544587 | NA | other | downstream | 645497 | 21460826 ~ 21471100 (-) |
| G285607 | NA | other | downstream | 1796547 | 20313067 ~ 20320050 (-) |
| rap1b | rap1b,LOC106576640,LOC107695907 | other | downstream | 2381365 | 19678283 ~ 19735232 (-) |
| LOC113532190 | NA | other | downstream | 3368764 | 18698921 ~ 18747833 (-) |
| trnae-cuc_38 | NA | other | downstream | 3904204 | 18212322 ~ 18212393 (-) |
| G286852 | irf5,LOC107655585 | other | upstream | 369283 | 22486236 ~ 22489467 (-) |
